JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ARMH2_chr6_24792335_24803917	0/0	c0005	693	4	0	2	0	2	0	copy fasta	ARMH2	chr6	24792335	24803917
ARMH2_chr6_24792335_24803917	0/0	c0006	690	4	0	1	0	1	2	copy fasta	ARMH2	chr6	24792335	24803917
ARMH2_chr6_24792335_24803917	0/0	c0007	693	1	0	0	0	0	1	copy fasta	ARMH2	chr6	24792335	24803917
ARMH3_chr10_101840599_102061173	1/1	c0001	2070	259	59	51	113	14	20	copy fasta	ARMH3	chr10	101840599	102061173
ARMH3_chr10_101840599_102061173	0/0	c0002	2070	1	1	0	0	0	0	copy fasta	ARMH3	chr10	101840599	102061173
ARMH3_chr10_101840599_102061173	0/0	c0003	2070	1	0	1	0	0	0	copy fasta	ARMH3	chr10	101840599	102061173
ARMH3_chr10_101840599_102061173	0/0	c0004	2070	1	0	0	1	0	0	copy fasta	ARMH3	chr10	101840599	102061173
ARMH4_chr14_57995761_58157213	1/0	c0001	2325	88	18	13	43	3	10	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/1	c0002	2325	68	9	14	33	2	9	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	c0003	2325	23	11	4	6	0	2	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	c0004	2325	19	12	4	0	1	2	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	c0005	2325	9	8	1	0	0	0	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	c0006	2325	8	4	4	0	0	0	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	c0007	2325	7	0	1	4	0	2	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	c0008	2325	6	2	0	3	0	1	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	c0009	2325	5	2	1	0	0	2	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	c0010	2325	5	5	0	0	0	0	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	c0011	2325	4	4	0	0	0	0	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	c0012	2325	2	2	0	0	0	0	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	c0013	2325	2	0	0	0	0	2	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	c0014	2325	2	2	0	0	0	0	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	c0015	2325	2	2	0	0	0	0	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	c0016	2325	2	0	2	0	0	0	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	c0017	2325	1	0	0	0	0	1	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	c0018	2325	1	0	0	0	0	1	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	c0019	2325	1	1	0	0	0	0	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	c0020	2325	1	0	0	1	0	0	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	c0021	2325	1	0	0	1	0	0	copy fasta	ARMH4	chr14	57995761	58157213
ARMH4_chr14_57995761_58157213	0/0	c0022	2325	1	0	0	1	0	0	copy fasta	ARMH4	chr14	57995761	58157213
ARMS2_chr10_122449653_122462352	1/0	c0001	324	215	65	48	72	10	19	copy fasta	ARMS2	chr10	122449653	122462352
ARMS2_chr10_122449653_122462352	0/1	c0002	324	129	27	19	71	4	7	copy fasta	ARMS2	chr10	122449653	122462352
ARMS2_chr10_122449653_122462352	0/0	c0003	324	61	4	5	43	4	5	copy fasta	ARMS2	chr10	122449653	122462352
ARMS2_chr10_122449653_122462352	0/0	c0004	324	19	4	6	0	0	9	copy fasta	ARMS2	chr10	122449653	122462352
ARMT1_chr6_151447466_151475101	1/0	c0001	1326	264	69	52	108	11	23	copy fasta	ARMT1	chr6	151447466	151475101
ARMT1_chr6_151447466_151475101	0/0	c0002	1326	94	11	12	66	0	5	copy fasta	ARMT1	chr6	151447466	151475101
ARMT1_chr6_151447466_151475101	0/1	c0003	1326	30	1	9	5	3	11	copy fasta	ARMT1	chr6	151447466	151475101
ARMT1_chr6_151447466_151475101	0/0	c0004	1326	11	0	0	10	0	1	copy fasta	ARMT1	chr6	151447466	151475101
ARMT1_chr6_151447466_151475101	0/0	c0005	1326	6	6	0	0	0	0	copy fasta	ARMT1	chr6	151447466	151475101
ARMT1_chr6_151447466_151475101	0/0	c0006	1326	5	0	0	5	0	0	copy fasta	ARMT1	chr6	151447466	151475101
ARMT1_chr6_151447466_151475101	0/0	c0007	1326	4	4	0	0	0	0	copy fasta	ARMT1	chr6	151447466	151475101
ARMT1_chr6_151447466_151475101	0/0	c0008	1326	1	0	0	0	0	1	copy fasta	ARMT1	chr6	151447466	151475101
ARMT1_chr6_151447466_151475101	0/0	c0009	1326	1	0	0	0	0	1	copy fasta	ARMT1	chr6	151447466	151475101
ARMT1_chr6_151447466_151475101	0/0	c0010	1326	1	0	1	0	0	0	copy fasta	ARMT1	chr6	151447466	151475101
ARMT1_chr6_151447466_151475101	0/0	c0011	1326	1	1	0	0	0	0	copy fasta	ARMT1	chr6	151447466	151475101
ARNT2_chr15_80399382_80602933	1/1	c0001	2154	203	63	32	74	8	24	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	c0002	2154	38	10	3	21	0	4	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	c0003	2154	20	12	3	0	3	2	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	c0004	2154	1	1	0	0	0	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	c0005	2154	1	0	0	1	0	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	c0006	2154	1	0	0	1	0	0	copy fasta	ARNT2	chr15	80399382	80602933