JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PPP1CC_chr12_110714680_110747891	0/0	c0003	972	2	0	2	0	0	0	copy fasta	PPP1CC	chr12	110714680	110747891
PPP1CC_chr12_110714680_110747891	0/0	c0004	972	1	1	0	0	0	0	copy fasta	PPP1CC	chr12	110714680	110747891
PPP1CC_chr12_110714680_110747891	0/0	c0005	972	1	0	1	0	0	0	copy fasta	PPP1CC	chr12	110714680	110747891
PPP1R10_chr6_30595413_30622243	0/1	c0001	2823	358	74	75	151	11	46	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R10_chr6_30595413_30622243	0/0	c0002	2823	40	3	3	32	0	2	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R10_chr6_30595413_30622243	0/0	c0003	2823	19	0	0	19	0	0	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R10_chr6_30595413_30622243	0/0	c0004	2823	10	0	0	10	0	0	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R10_chr6_30595413_30622243	0/0	c0005	2823	7	5	1	1	0	0	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R10_chr6_30595413_30622243	0/0	c0006	2823	6	1	4	0	1	0	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R10_chr6_30595413_30622243	0/0	c0007	2823	5	4	1	0	0	0	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R10_chr6_30595413_30622243	0/0	c0008	2823	2	2	0	0	0	0	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R10_chr6_30595413_30622243	0/0	c0009	2823	2	0	2	0	0	0	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R10_chr6_30595413_30622243	0/0	c0010	2823	2	0	0	0	2	0	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R10_chr6_30595413_30622243	0/0	c0011	2823	2	0	0	2	0	0	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R10_chr6_30595413_30622243	0/0	c0012	2823	1	0	0	1	0	0	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R10_chr6_30595413_30622243	0/0	c0013	2727	1	0	0	1	0	0	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R10_chr6_30595413_30622243	0/0	c0014	2823	1	0	0	1	0	0	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R10_chr6_30595413_30622243	0/0	c0015	2823	1	0	0	1	0	0	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R10_chr6_30595413_30622243	0/0	c0016	2823	1	1	0	0	0	0	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R10_chr6_30595413_30622243	0/0	c0017	2823	1	0	0	1	0	0	copy fasta	PPP1R10	chr6	30595413	30622243
PPP1R11_chr6_30062198_30075333	0/1	c0001	381	307	44	66	149	12	35	copy fasta	PPP1R11	chr6	30062198	30075333
PPP1R11_chr6_30062198_30075333	0/0	c0002	381	124	35	13	62	6	8	copy fasta	PPP1R11	chr6	30062198	30075333
PPP1R11_chr6_30062198_30075333	0/0	c0003	381	9	8	1	0	0	0	copy fasta	PPP1R11	chr6	30062198	30075333
PPP1R11_chr6_30062198_30075333	0/0	c0004	381	1	0	0	1	0	0	copy fasta	PPP1R11	chr6	30062198	30075333
PPP1R11_chr6_30062198_30075333	0/0	c0005	381	1	1	0	0	0	0	copy fasta	PPP1R11	chr6	30062198	30075333
PPP1R11_chr6_30062198_30075333	0/0	c0006	381	1	0	0	0	0	1	copy fasta	PPP1R11	chr6	30062198	30075333
PPP1R12A_chr12_79768568_79940097	1/1	c0001	3093	185	33	28	92	5	25	copy fasta	PPP1R12A	chr12	79768568	79940097
PPP1R12A_chr12_79768568_79940097	0/0	c0002	3093	120	39	12	56	3	10	copy fasta	PPP1R12A	chr12	79768568	79940097
PPP1R12A_chr12_79768568_79940097	0/0	c0003	3093	1	1	0	0	0	0	copy fasta	PPP1R12A	chr12	79768568	79940097
PPP1R12A_chr12_79768568_79940097	0/0	c0004	3093	1	1	0	0	0	0	copy fasta	PPP1R12A	chr12	79768568	79940097
PPP1R12A_chr12_79768568_79940097	0/0	c0005	3093	1	0	0	0	0	1	copy fasta	PPP1R12A	chr12	79768568	79940097
PPP1R12A_chr12_79768568_79940097	0/0	c0006	3093	1	0	0	1	0	0	copy fasta	PPP1R12A	chr12	79768568	79940097
PPP1R12A_chr12_79768568_79940097	0/0	c0007	3093	1	1	0	0	0	0	copy fasta	PPP1R12A	chr12	79768568	79940097
PPP1R12A_chr12_79768568_79940097	0/0	c0008	3093	1	0	0	1	0	0	copy fasta	PPP1R12A	chr12	79768568	79940097
PPP1R12A_chr12_79768568_79940097	0/0	c0009	3093	1	1	0	0	0	0	copy fasta	PPP1R12A	chr12	79768568	79940097
PPP1R12B_chr1_202343699_202597702	1/1	c0001	2949	244	70	51	92	12	17	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	c0002	2949	2	0	2	0	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	c0003	2949	2	0	0	2	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	c0004	2949	1	1	0	0	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	c0005	2949	1	0	0	1	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	c0006	2949	1	0	0	1	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	c0007	2949	1	0	0	0	0	1	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	c0008	2949	1	1	0	0	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	c0009	2934	1	0	1	0	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12C_chr19_55085918_55122637	0/0	c0001	2349	125	36	16	63	1	9	copy fasta	PPP1R12C	chr19	55085918	55122637
PPP1R12C_chr19_55085918_55122637	1/0	c0002	2349	111	6	41	41	7	15	copy fasta	PPP1R12C	chr19	55085918	55122637
PPP1R12C_chr19_55085918_55122637	0/0	c0003	2349	70	16	4	43	0	7	copy fasta	PPP1R12C	chr19	55085918	55122637
PPP1R12C_chr19_55085918_55122637	0/1	c0004	2349	48	10	10	14	4	9	copy fasta	PPP1R12C	chr19	55085918	55122637
PPP1R12C_chr19_55085918_55122637	0/0	c0005	2349	10	7	3	0	0	0	copy fasta	PPP1R12C	chr19	55085918	55122637
PPP1R12C_chr19_55085918_55122637	0/0	c0006	2349	3	3	0	0	0	0	copy fasta	PPP1R12C	chr19	55085918	55122637