JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PPP1R15A_chr19_48867421_48881058	0/0	c0031	2025	1	0	0	1	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	c0032	2025	1	0	0	1	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	c0033	2025	1	0	1	0	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	c0034	2025	1	0	0	1	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	c0035	2025	1	1	0	0	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	c0036	2025	1	1	0	0	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	c0037	2025	1	0	1	0	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	c0038	2025	1	0	1	0	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	c0039	2025	1	1	0	0	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	c0040	2025	1	0	0	1	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	c0041	2025	1	0	1	0	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	c0042	2025	1	0	1	0	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	c0043	2025	1	0	0	1	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	c0044	2025	1	0	0	1	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	c0045	2025	1	0	0	1	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	c0046	2025	1	0	0	1	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	c0047	2025	1	1	0	0	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	c0048	2025	1	0	1	0	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	c0049	2025	1	1	0	0	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15B_chr1_204398381_204416817	1/1	c0001	2142	310	53	49	151	18	37	copy fasta	PPP1R15B	chr1	204398381	204416817
PPP1R15B_chr1_204398381_204416817	0/0	c0002	2142	36	17	5	11	0	3	copy fasta	PPP1R15B	chr1	204398381	204416817
PPP1R15B_chr1_204398381_204416817	0/0	c0003	2142	11	7	3	0	0	1	copy fasta	PPP1R15B	chr1	204398381	204416817
PPP1R15B_chr1_204398381_204416817	0/0	c0004	2142	8	1	5	0	0	2	copy fasta	PPP1R15B	chr1	204398381	204416817
PPP1R15B_chr1_204398381_204416817	0/0	c0005	2142	7	7	0	0	0	0	copy fasta	PPP1R15B	chr1	204398381	204416817
PPP1R15B_chr1_204398381_204416817	0/0	c0006	2142	5	0	0	5	0	0	copy fasta	PPP1R15B	chr1	204398381	204416817
PPP1R15B_chr1_204398381_204416817	0/0	c0007	2142	4	0	0	4	0	0	copy fasta	PPP1R15B	chr1	204398381	204416817
PPP1R15B_chr1_204398381_204416817	0/0	c0008	2142	3	3	0	0	0	0	copy fasta	PPP1R15B	chr1	204398381	204416817
PPP1R15B_chr1_204398381_204416817	0/0	c0009	2142	2	0	0	2	0	0	copy fasta	PPP1R15B	chr1	204398381	204416817
PPP1R15B_chr1_204398381_204416817	0/0	c0010	2142	2	2	0	0	0	0	copy fasta	PPP1R15B	chr1	204398381	204416817
PPP1R15B_chr1_204398381_204416817	0/0	c0011	2142	2	0	1	0	0	1	copy fasta	PPP1R15B	chr1	204398381	204416817
PPP1R15B_chr1_204398381_204416817	0/0	c0012	2142	1	0	0	1	0	0	copy fasta	PPP1R15B	chr1	204398381	204416817
PPP1R15B_chr1_204398381_204416817	0/0	c0013	2142	1	1	0	0	0	0	copy fasta	PPP1R15B	chr1	204398381	204416817
PPP1R15B_chr1_204398381_204416817	0/0	c0014	2142	1	1	0	0	0	0	copy fasta	PPP1R15B	chr1	204398381	204416817
PPP1R15B_chr1_204398381_204416817	0/0	c0015	2142	1	0	1	0	0	0	copy fasta	PPP1R15B	chr1	204398381	204416817
PPP1R16A_chr8_144472982_144507121	1/1	c0001	1587	336	83	66	133	14	38	copy fasta	PPP1R16A	chr8	144472982	144507121
PPP1R16A_chr8_144472982_144507121	0/0	c0002	1587	5	0	0	5	0	0	copy fasta	PPP1R16A	chr8	144472982	144507121
PPP1R16A_chr8_144472982_144507121	0/0	c0003	1587	3	0	0	3	0	0	copy fasta	PPP1R16A	chr8	144472982	144507121
PPP1R16A_chr8_144472982_144507121	0/0	c0004	1587	2	2	0	0	0	0	copy fasta	PPP1R16A	chr8	144472982	144507121
PPP1R16A_chr8_144472982_144507121	0/0	c0005	1587	2	0	0	2	0	0	copy fasta	PPP1R16A	chr8	144472982	144507121
PPP1R16A_chr8_144472982_144507121	0/0	c0006	1587	1	1	0	0	0	0	copy fasta	PPP1R16A	chr8	144472982	144507121
PPP1R16A_chr8_144472982_144507121	0/0	c0007	1587	1	0	1	0	0	0	copy fasta	PPP1R16A	chr8	144472982	144507121
PPP1R16A_chr8_144472982_144507121	0/0	c0008	1587	1	0	0	0	0	1	copy fasta	PPP1R16A	chr8	144472982	144507121
PPP1R16A_chr8_144472982_144507121	0/0	c0009	1587	1	0	1	0	0	0	copy fasta	PPP1R16A	chr8	144472982	144507121
PPP1R16A_chr8_144472982_144507121	0/0	c0010	1587	1	1	0	0	0	0	copy fasta	PPP1R16A	chr8	144472982	144507121
PPP1R16A_chr8_144472982_144507121	0/0	c0011	1587	1	0	0	1	0	0	copy fasta	PPP1R16A	chr8	144472982	144507121
PPP1R16A_chr8_144472982_144507121	0/0	c0012	1587	1	0	0	0	0	1	copy fasta	PPP1R16A	chr8	144472982	144507121
PPP1R16A_chr8_144472982_144507121	0/0	c0013	1587	1	1	0	0	0	0	copy fasta	PPP1R16A	chr8	144472982	144507121
PPP1R16B_chr20_38800697_38928024	1/0	c0001	1704	147	44	24	62	4	12	copy fasta	PPP1R16B	chr20	38800697	38928024
PPP1R16B_chr20_38800697_38928024	0/1	c0002	1704	84	22	10	44	2	5	copy fasta	PPP1R16B	chr20	38800697	38928024
PPP1R16B_chr20_38800697_38928024	0/0	c0003	1704	5	5	0	0	0	0	copy fasta	PPP1R16B	chr20	38800697	38928024