JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PPP1R16B_chr20_38800697_38928024	0/0	c0004	1704	1	1	0	0	0	0	copy fasta	PPP1R16B	chr20	38800697	38928024
PPP1R16B_chr20_38800697_38928024	0/0	c0005	1704	1	0	1	0	0	0	copy fasta	PPP1R16B	chr20	38800697	38928024
PPP1R16B_chr20_38800697_38928024	0/0	c0006	1704	1	1	0	0	0	0	copy fasta	PPP1R16B	chr20	38800697	38928024
PPP1R16B_chr20_38800697_38928024	0/0	c0007	1704	1	1	0	0	0	0	copy fasta	PPP1R16B	chr20	38800697	38928024
PPP1R16B_chr20_38800697_38928024	0/0	c0008	1704	1	0	0	1	0	0	copy fasta	PPP1R16B	chr20	38800697	38928024
PPP1R16B_chr20_38800697_38928024	0/0	c0009	1704	1	0	0	1	0	0	copy fasta	PPP1R16B	chr20	38800697	38928024
PPP1R16B_chr20_38800697_38928024	0/0	c0010	1704	1	0	1	0	0	0	copy fasta	PPP1R16B	chr20	38800697	38928024
PPP1R16B_chr20_38800697_38928024	0/0	c0011	1739	1	0	0	0	0	1	copy fasta	PPP1R16B	chr20	38800697	38928024
PPP1R17_chr7_31682215_31713455	1/1	c0001	468	329	74	63	146	10	34	copy fasta	PPP1R17	chr7	31682215	31713455
PPP1R17_chr7_31682215_31713455	0/0	c0002	468	79	5	6	60	4	4	copy fasta	PPP1R17	chr7	31682215	31713455
PPP1R17_chr7_31682215_31713455	0/0	c0003	468	16	14	2	0	0	0	copy fasta	PPP1R17	chr7	31682215	31713455
PPP1R17_chr7_31682215_31713455	0/0	c0004	468	8	4	0	1	0	3	copy fasta	PPP1R17	chr7	31682215	31713455
PPP1R17_chr7_31682215_31713455	0/0	c0005	468	5	0	3	0	0	2	copy fasta	PPP1R17	chr7	31682215	31713455
PPP1R17_chr7_31682215_31713455	0/0	c0006	468	2	0	0	2	0	0	copy fasta	PPP1R17	chr7	31682215	31713455
PPP1R17_chr7_31682215_31713455	0/0	c0007	468	1	0	0	1	0	0	copy fasta	PPP1R17	chr7	31682215	31713455
PPP1R17_chr7_31682215_31713455	0/0	c0008	468	1	1	0	0	0	0	copy fasta	PPP1R17	chr7	31682215	31713455
PPP1R17_chr7_31682215_31713455	0/0	c0009	468	1	0	0	0	0	1	copy fasta	PPP1R17	chr7	31682215	31713455
PPP1R18_chr6_30671389_30691645	0/0	c0001	1842	307	62	66	140	11	28	copy fasta	PPP1R18	chr6	30671389	30691645
PPP1R18_chr6_30671389_30691645	0/0	c0002	1842	72	8	4	46	1	13	copy fasta	PPP1R18	chr6	30671389	30691645
PPP1R18_chr6_30671389_30691645	0/1	c0003	1842	15	1	0	6	1	6	copy fasta	PPP1R18	chr6	30671389	30691645
PPP1R18_chr6_30671389_30691645	0/0	c0004	1842	5	3	2	0	0	0	copy fasta	PPP1R18	chr6	30671389	30691645
PPP1R18_chr6_30671389_30691645	0/0	c0005	1842	5	0	4	0	1	0	copy fasta	PPP1R18	chr6	30671389	30691645
PPP1R18_chr6_30671389_30691645	0/0	c0006	1842	5	0	4	0	1	0	copy fasta	PPP1R18	chr6	30671389	30691645
PPP1R18_chr6_30671389_30691645	0/0	c0007	1842	4	4	0	0	0	0	copy fasta	PPP1R18	chr6	30671389	30691645
PPP1R18_chr6_30671389_30691645	0/0	c0008	1842	2	2	0	0	0	0	copy fasta	PPP1R18	chr6	30671389	30691645
PPP1R18_chr6_30671389_30691645	0/0	c0009	1842	2	0	0	2	0	0	copy fasta	PPP1R18	chr6	30671389	30691645
PPP1R18_chr6_30671389_30691645	0/0	c0010	1842	2	2	0	0	0	0	copy fasta	PPP1R18	chr6	30671389	30691645
PPP1R18_chr6_30671389_30691645	0/0	c0011	1842	1	0	0	1	0	0	copy fasta	PPP1R18	chr6	30671389	30691645
PPP1R18_chr6_30671389_30691645	0/0	c0012	1842	1	0	0	0	0	1	copy fasta	PPP1R18	chr6	30671389	30691645
PPP1R18_chr6_30671389_30691645	0/0	c0013	1842	1	0	0	1	0	0	copy fasta	PPP1R18	chr6	30671389	30691645
PPP1R18_chr6_30671389_30691645	0/0	c0014	1842	1	0	0	0	1	0	copy fasta	PPP1R18	chr6	30671389	30691645
PPP1R18_chr6_30671389_30691645	0/0	c0015	1842	1	0	0	1	0	0	copy fasta	PPP1R18	chr6	30671389	30691645
PPP1R18_chr6_30671389_30691645	0/0	c0016	1842	1	0	0	1	0	0	copy fasta	PPP1R18	chr6	30671389	30691645
PPP1R1A_chr12_54574246_54593659	1/0	c0001	516	371	75	56	197	15	27	copy fasta	PPP1R1A	chr12	54574246	54593659
PPP1R1A_chr12_54574246_54593659	0/1	c0002	516	55	6	21	11	3	13	copy fasta	PPP1R1A	chr12	54574246	54593659
PPP1R1A_chr12_54574246_54593659	0/0	c0003	516	12	11	1	0	0	0	copy fasta	PPP1R1A	chr12	54574246	54593659
PPP1R1A_chr12_54574246_54593659	0/0	c0004	516	6	6	0	0	0	0	copy fasta	PPP1R1A	chr12	54574246	54593659
PPP1R1B_chr17_39621952_39641624	1/1	c0001	615	318	68	65	135	14	34	copy fasta	PPP1R1B	chr17	39621952	39641624
PPP1R1B_chr17_39621952_39641624	0/0	c0002	615	16	13	1	0	0	2	copy fasta	PPP1R1B	chr17	39621952	39641624
PPP1R1B_chr17_39621952_39641624	0/0	c0003	615	7	7	0	0	0	0	copy fasta	PPP1R1B	chr17	39621952	39641624
PPP1R1B_chr17_39621952_39641624	0/0	c0004	612	3	0	0	3	0	0	copy fasta	PPP1R1B	chr17	39621952	39641624
PPP1R1B_chr17_39621952_39641624	0/0	c0005	615	2	0	2	0	0	0	copy fasta	PPP1R1B	chr17	39621952	39641624
PPP1R1C_chr2_181980853_182122756	1/0	c0001	330	239	29	47	127	15	20	copy fasta	PPP1R1C	chr2	181980853	182122756
PPP1R1C_chr2_181980853_182122756	0/1	c0002	330	104	56	11	31	1	4	copy fasta	PPP1R1C	chr2	181980853	182122756
PPP1R1C_chr2_181980853_182122756	0/0	c0003	330	1	1	0	0	0	0	copy fasta	PPP1R1C	chr2	181980853	182122756
PPP1R21_chr2_48435766_48520386	1/1	c0001	2343	317	62	53	159	12	29	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	c0002	2343	20	1	7	1	2	9	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	c0003	2343	9	7	1	0	0	1	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	c0004	2343	7	0	3	0	3	1	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	c0005	2343	6	4	2	0	0	0	copy fasta	PPP1R21	chr2	48435766	48520386