JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PPP1R21_chr2_48435766_48520386	0/0	c0006	2343	3	3	0	0	0	0	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	c0007	2343	2	2	0	0	0	0	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	c0008	2343	2	0	0	0	0	2	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	c0009	2343	1	0	0	1	0	0	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	c0010	2343	1	1	0	0	0	0	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	c0011	2343	1	0	0	0	1	0	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	c0012	2343	1	1	0	0	0	0	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	c0013	2343	1	1	0	0	0	0	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	c0014	2343	1	0	0	1	0	0	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R26_chr9_135474782_135493892	0/0	c0001	3630	101	24	27	27	11	12	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0002	3630	83	0	13	66	0	4	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0003	3630	54	2	11	22	2	17	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0004	3630	54	0	7	37	5	5	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0005	3630	18	10	1	6	0	1	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0006	3630	14	6	4	0	0	4	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0007	3630	11	0	0	10	0	1	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0008	3630	8	7	1	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0009	3630	7	0	4	3	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0010	3630	7	7	0	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0011	3630	5	0	0	4	0	1	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0012	3630	5	0	0	5	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0013	3630	5	0	0	5	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0014	3630	5	0	0	5	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0015	3630	5	5	0	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0016	3630	5	1	4	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0017	3630	4	4	0	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0018	3630	4	3	1	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0019	3630	4	4	0	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	1/1	c0020	3630	3	0	0	0	0	1	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0021	3630	3	3	0	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0022	3630	3	0	0	3	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0023	3630	3	3	0	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0024	3630	2	0	0	2	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0025	3630	2	2	0	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0026	3630	2	2	0	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0027	3630	2	1	1	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0028	3630	2	0	0	2	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0029	3630	2	1	0	1	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0030	3630	2	1	1	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0031	3630	2	2	0	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0032	3630	2	0	2	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0033	3630	2	0	0	2	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0034	3630	2	1	1	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0035	3630	2	2	0	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0036	3630	2	2	0	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0037	3630	1	0	1	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0038	3630	1	0	0	1	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0039	3644	1	0	0	1	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0040	3630	1	0	0	0	0	1	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0041	3630	1	1	0	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892