JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PPP1R26_chr9_135474782_135493892	0/0	c0042	3630	1	0	0	1	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0043	3630	1	0	1	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0044	3630	1	0	1	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0045	3630	1	0	0	1	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0046	3630	1	0	0	1	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0047	3630	1	0	0	1	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0048	3630	1	0	1	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0049	3630	1	0	0	1	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0050	3630	1	1	0	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0051	3630	1	1	0	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0052	3630	1	0	0	1	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0053	3630	1	0	0	1	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0054	3630	1	0	1	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0055	3630	1	0	0	0	0	1	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0056	3630	1	0	0	1	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0057	3630	1	0	0	1	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0058	3630	1	1	0	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0059	3630	1	0	0	1	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0060	3630	1	1	0	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	c0061	3630	1	0	1	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R27_chr17_81828492_81840050	1/1	c0001	465	343	76	76	131	14	44	copy fasta	PPP1R27	chr17	81828492	81840050
PPP1R27_chr17_81828492_81840050	0/0	c0002	465	1	0	1	0	0	0	copy fasta	PPP1R27	chr17	81828492	81840050
PPP1R27_chr17_81828492_81840050	0/0	c0003	465	1	0	0	1	0	0	copy fasta	PPP1R27	chr17	81828492	81840050
PPP1R27_chr17_81828492_81840050	0/0	c0004	465	1	0	1	0	0	0	copy fasta	PPP1R27	chr17	81828492	81840050
PPP1R2B_chr5_156845295_156857528	1/1	c0001	618	420	95	73	194	17	39	copy fasta	PPP1R2B	chr5	156845295	156857528
PPP1R2B_chr5_156845295_156857528	0/0	c0002	618	4	1	2	0	1	0	copy fasta	PPP1R2B	chr5	156845295	156857528
PPP1R2B_chr5_156845295_156857528	0/0	c0003	618	1	1	0	0	0	0	copy fasta	PPP1R2B	chr5	156845295	156857528
PPP1R2B_chr5_156845295_156857528	0/0	c0004	618	1	0	0	1	0	0	copy fasta	PPP1R2B	chr5	156845295	156857528
PPP1R2B_chr5_156845295_156857528	0/0	c0005	618	1	0	1	0	0	0	copy fasta	PPP1R2B	chr5	156845295	156857528
PPP1R2B_chr5_156845295_156857528	0/0	c0006	618	1	0	0	1	0	0	copy fasta	PPP1R2B	chr5	156845295	156857528
PPP1R2B_chr5_156845295_156857528	0/0	c0007	618	1	1	0	0	0	0	copy fasta	PPP1R2B	chr5	156845295	156857528
PPP1R2B_chr5_156845295_156857528	0/0	c0008	618	1	0	0	0	0	1	copy fasta	PPP1R2B	chr5	156845295	156857528
PPP1R2C_chrX_42772366_42783163	1/1	c0001	609	320	68	53	162	8	27	copy fasta	PPP1R2C	chrX	42772366	42783163
PPP1R2C_chrX_42772366_42783163	0/0	c0002	609	4	3	1	0	0	0	copy fasta	PPP1R2C	chrX	42772366	42783163
PPP1R2C_chrX_42772366_42783163	0/0	c0003	609	4	0	0	4	0	0	copy fasta	PPP1R2C	chrX	42772366	42783163
PPP1R2C_chrX_42772366_42783163	0/0	c0004	609	2	2	0	0	0	0	copy fasta	PPP1R2C	chrX	42772366	42783163
PPP1R2C_chrX_42772366_42783163	0/0	c0005	605	1	0	0	1	0	0	copy fasta	PPP1R2C	chrX	42772366	42783163
PPP1R2C_chrX_42772366_42783163	0/0	c0006	609	1	1	0	0	0	0	copy fasta	PPP1R2C	chrX	42772366	42783163
PPP1R2C_chrX_42772366_42783163	0/0	c0007	609	1	0	0	0	1	0	copy fasta	PPP1R2C	chrX	42772366	42783163
PPP1R2_chr3_195509428_195548325	1/1	c0001	618	385	91	60	170	18	44	copy fasta	PPP1R2	chr3	195509428	195548325
PPP1R2_chr3_195509428_195548325	0/0	c0002	618	1	1	0	0	0	0	copy fasta	PPP1R2	chr3	195509428	195548325
PPP1R2_chr3_195509428_195548325	0/0	c0003	618	1	1	0	0	0	0	copy fasta	PPP1R2	chr3	195509428	195548325
PPP1R2_chr3_195509428_195548325	0/0	c0004	618	1	1	0	0	0	0	copy fasta	PPP1R2	chr3	195509428	195548325
PPP1R32_chr11_61476120_61495928	0/0	c0001	1278	189	25	51	82	7	24	copy fasta	PPP1R32	chr11	61476120	61495928
PPP1R32_chr11_61476120_61495928	1/0	c0002	1278	50	31	7	4	2	5	copy fasta	PPP1R32	chr11	61476120	61495928
PPP1R32_chr11_61476120_61495928	0/0	c0003	1278	16	15	1	0	0	0	copy fasta	PPP1R32	chr11	61476120	61495928
PPP1R32_chr11_61476120_61495928	0/0	c0004	1278	12	10	2	0	0	0	copy fasta	PPP1R32	chr11	61476120	61495928
PPP1R32_chr11_61476120_61495928	0/0	c0005	1278	6	3	1	0	0	2	copy fasta	PPP1R32	chr11	61476120	61495928
PPP1R32_chr11_61476120_61495928	0/0	c0006	1278	5	5	0	0	0	0	copy fasta	PPP1R32	chr11	61476120	61495928
PPP1R32_chr11_61476120_61495928	0/0	c0007	1278	4	0	2	0	1	1	copy fasta	PPP1R32	chr11	61476120	61495928