JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PPP1R32_chr11_61476120_61495928	0/0	c0008	1278	2	2	0	0	0	0	copy fasta	PPP1R32	chr11	61476120	61495928
PPP1R32_chr11_61476120_61495928	0/0	c0009	1278	2	2	0	0	0	0	copy fasta	PPP1R32	chr11	61476120	61495928
PPP1R32_chr11_61476120_61495928	0/0	c0010	1278	1	1	0	0	0	0	copy fasta	PPP1R32	chr11	61476120	61495928
PPP1R32_chr11_61476120_61495928	0/1	c0011	1278	1	0	0	0	0	0	copy fasta	PPP1R32	chr11	61476120	61495928
PPP1R32_chr11_61476120_61495928	0/0	c0012	1278	1	0	0	1	0	0	copy fasta	PPP1R32	chr11	61476120	61495928
PPP1R32_chr11_61476120_61495928	0/0	c0013	1278	1	0	0	0	0	1	copy fasta	PPP1R32	chr11	61476120	61495928
PPP1R32_chr11_61476120_61495928	0/0	c0014	1278	1	0	0	0	0	1	copy fasta	PPP1R32	chr11	61476120	61495928
PPP1R32_chr11_61476120_61495928	0/0	c0015	1278	1	1	0	0	0	0	copy fasta	PPP1R32	chr11	61476120	61495928
PPP1R32_chr11_61476120_61495928	0/0	c0016	1278	1	0	0	1	0	0	copy fasta	PPP1R32	chr11	61476120	61495928
PPP1R32_chr11_61476120_61495928	0/0	c0017	1278	1	1	0	0	0	0	copy fasta	PPP1R32	chr11	61476120	61495928
PPP1R35_chr7_100430282_100441497	1/1	c0001	762	320	75	58	127	14	44	copy fasta	PPP1R35	chr7	100430282	100441497
PPP1R35_chr7_100430282_100441497	0/0	c0002	762	11	11	0	0	0	0	copy fasta	PPP1R35	chr7	100430282	100441497
PPP1R35_chr7_100430282_100441497	0/0	c0003	762	1	0	0	1	0	0	copy fasta	PPP1R35	chr7	100430282	100441497
PPP1R35_chr7_100430282_100441497	0/0	c0004	762	1	1	0	0	0	0	copy fasta	PPP1R35	chr7	100430282	100441497
PPP1R35_chr7_100430282_100441497	0/0	c0005	762	1	1	0	0	0	0	copy fasta	PPP1R35	chr7	100430282	100441497
PPP1R36_chr14_64544961_64594381	0/0	c0001	1269	149	45	30	50	5	19	copy fasta	PPP1R36	chr14	64544961	64594381
PPP1R36_chr14_64544961_64594381	1/0	c0002	1269	123	21	28	59	7	7	copy fasta	PPP1R36	chr14	64544961	64594381
PPP1R36_chr14_64544961_64594381	0/0	c0003	1269	26	6	3	5	0	12	copy fasta	PPP1R36	chr14	64544961	64594381
PPP1R36_chr14_64544961_64594381	0/0	c0004	1269	7	5	2	0	0	0	copy fasta	PPP1R36	chr14	64544961	64594381
PPP1R36_chr14_64544961_64594381	0/0	c0005	1269	5	4	1	0	0	0	copy fasta	PPP1R36	chr14	64544961	64594381
PPP1R36_chr14_64544961_64594381	0/1	c0006	1269	4	0	3	0	0	0	copy fasta	PPP1R36	chr14	64544961	64594381
PPP1R36_chr14_64544961_64594381	0/0	c0007	1269	3	1	2	0	0	0	copy fasta	PPP1R36	chr14	64544961	64594381
PPP1R36_chr14_64544961_64594381	0/0	c0008	1269	2	0	0	2	0	0	copy fasta	PPP1R36	chr14	64544961	64594381
PPP1R36_chr14_64544961_64594381	0/0	c0009	1269	2	2	0	0	0	0	copy fasta	PPP1R36	chr14	64544961	64594381
PPP1R36_chr14_64544961_64594381	0/0	c0010	1269	1	0	0	1	0	0	copy fasta	PPP1R36	chr14	64544961	64594381
PPP1R36_chr14_64544961_64594381	0/0	c0011	1269	1	0	0	1	0	0	copy fasta	PPP1R36	chr14	64544961	64594381
PPP1R36_chr14_64544961_64594381	0/0	c0012	1269	1	0	0	1	0	0	copy fasta	PPP1R36	chr14	64544961	64594381
PPP1R36_chr14_64544961_64594381	0/0	c0013	1269	1	0	0	1	0	0	copy fasta	PPP1R36	chr14	64544961	64594381
PPP1R36_chr14_64544961_64594381	0/0	c0014	1269	1	0	1	0	0	0	copy fasta	PPP1R36	chr14	64544961	64594381
PPP1R36_chr14_64544961_64594381	0/0	c0015	1269	1	1	0	0	0	0	copy fasta	PPP1R36	chr14	64544961	64594381
PPP1R36_chr14_64544961_64594381	0/0	c0016	1269	1	1	0	0	0	0	copy fasta	PPP1R36	chr14	64544961	64594381
PPP1R37_chr19_45088179_45152285	1/1	c0001	2076	285	73	58	109	11	32	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R37_chr19_45088179_45152285	0/0	c0002	2076	14	12	2	0	0	0	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R37_chr19_45088179_45152285	0/0	c0003	2076	14	1	8	0	1	4	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R37_chr19_45088179_45152285	0/0	c0004	2076	6	0	4	2	0	0	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R37_chr19_45088179_45152285	0/0	c0005	2076	5	5	0	0	0	0	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R37_chr19_45088179_45152285	0/0	c0006	2076	3	3	0	0	0	0	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R37_chr19_45088179_45152285	0/0	c0007	2076	2	0	2	0	0	0	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R37_chr19_45088179_45152285	0/0	c0008	2076	1	0	0	1	0	0	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R37_chr19_45088179_45152285	0/0	c0009	2076	1	0	0	1	0	0	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R37_chr19_45088179_45152285	0/0	c0010	2076	1	1	0	0	0	0	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R37_chr19_45088179_45152285	0/0	c0011	2076	1	1	0	0	0	0	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R37_chr19_45088179_45152285	0/0	c0012	2076	1	1	0	0	0	0	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R37_chr19_45088179_45152285	0/0	c0013	2076	1	1	0	0	0	0	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R37_chr19_45088179_45152285	0/0	c0014	2076	1	1	0	0	0	0	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R37_chr19_45088179_45152285	0/0	c0015	2076	1	0	0	0	0	1	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R37_chr19_45088179_45152285	0/0	c0016	2076	1	0	1	0	0	0	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R37_chr19_45088179_45152285	0/0	c0017	2076	1	0	0	1	0	0	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R37_chr19_45088179_45152285	0/0	c0018	2076	1	0	1	0	0	0	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R37_chr19_45088179_45152285	0/0	c0019	2076	1	1	0	0	0	0	copy fasta	PPP1R37	chr19	45088179	45152285