JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PPP1R37_chr19_45088179_45152285	0/0	c0020	2076	1	0	0	0	0	1	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R3A_chr7_113871777_113924009	0/1	c0001	3369	147	31	42	51	7	15	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	0/0	c0002	3369	72	8	5	46	1	12	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	0/0	c0003	3369	22	0	2	20	0	0	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	0/0	c0004	3369	16	16	0	0	0	0	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	0/0	c0005	3369	9	9	0	0	0	0	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	0/0	c0006	3369	5	3	2	0	0	0	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	0/0	c0007	3369	3	3	0	0	0	0	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	0/0	c0008	3369	3	0	0	3	0	0	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	1/0	c0009	3369	2	1	0	0	0	0	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	0/0	c0010	3369	1	0	0	0	1	0	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	0/0	c0011	3369	1	1	0	0	0	0	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	0/0	c0012	3369	1	0	0	0	0	1	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	0/0	c0013	3482	1	0	0	0	1	0	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	0/0	c0014	3369	1	0	0	0	0	1	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	0/0	c0015	3389	1	0	0	1	0	0	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	0/0	c0016	3369	1	0	0	0	0	1	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	0/0	c0017	3369	1	0	0	1	0	0	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	0/0	c0018	3369	1	0	1	0	0	0	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	0/0	c0019	3369	1	1	0	0	0	0	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	0/0	c0020	3369	1	0	1	0	0	0	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	0/0	c0021	3369	1	1	0	0	0	0	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	0/0	c0022	3369	1	1	0	0	0	0	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	0/0	c0023	3369	1	1	0	0	0	0	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	0/0	c0024	3369	1	0	1	0	0	0	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3B_chr8_9131255_9155658	1/1	c0001	858	405	80	77	193	18	35	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	c0002	858	20	3	1	10	0	6	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	c0003	858	14	0	1	7	0	6	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	c0004	858	3	3	0	0	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	c0005	858	1	0	0	0	0	1	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	c0006	858	1	0	1	0	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3C_chr10_91623442_91638071	1/1	c0001	954	344	89	73	131	18	31	copy fasta	PPP1R3C	chr10	91623442	91638071
PPP1R3C_chr10_91623442_91638071	0/0	c0002	954	3	0	3	0	0	0	copy fasta	PPP1R3C	chr10	91623442	91638071
PPP1R3C_chr10_91623442_91638071	0/0	c0003	954	3	0	2	0	0	1	copy fasta	PPP1R3C	chr10	91623442	91638071
PPP1R3C_chr10_91623442_91638071	0/0	c0004	954	2	2	0	0	0	0	copy fasta	PPP1R3C	chr10	91623442	91638071
PPP1R3C_chr10_91623442_91638071	0/0	c0005	954	2	2	0	0	0	0	copy fasta	PPP1R3C	chr10	91623442	91638071
PPP1R3C_chr10_91623442_91638071	0/0	c0006	954	2	2	0	0	0	0	copy fasta	PPP1R3C	chr10	91623442	91638071
PPP1R3C_chr10_91623442_91638071	0/0	c0007	954	1	0	0	1	0	0	copy fasta	PPP1R3C	chr10	91623442	91638071
PPP1R3C_chr10_91623442_91638071	0/0	c0008	954	1	1	0	0	0	0	copy fasta	PPP1R3C	chr10	91623442	91638071
PPP1R3C_chr10_91623442_91638071	0/0	c0009	954	1	0	0	1	0	0	copy fasta	PPP1R3C	chr10	91623442	91638071
PPP1R3C_chr10_91623442_91638071	0/0	c0010	954	1	0	0	1	0	0	copy fasta	PPP1R3C	chr10	91623442	91638071
PPP1R3D_chr20_59931663_59945305	1/1	c0001	900	376	85	63	168	16	42	copy fasta	PPP1R3D	chr20	59931663	59945305
PPP1R3D_chr20_59931663_59945305	0/0	c0002	900	2	0	0	2	0	0	copy fasta	PPP1R3D	chr20	59931663	59945305
PPP1R3D_chr20_59931663_59945305	0/0	c0003	900	1	1	0	0	0	0	copy fasta	PPP1R3D	chr20	59931663	59945305
PPP1R3D_chr20_59931663_59945305	0/0	c0004	900	1	0	1	0	0	0	copy fasta	PPP1R3D	chr20	59931663	59945305
PPP1R3D_chr20_59931663_59945305	0/0	c0005	900	1	0	1	0	0	0	copy fasta	PPP1R3D	chr20	59931663	59945305
PPP1R3D_chr20_59931663_59945305	0/0	c0006	900	1	0	1	0	0	0	copy fasta	PPP1R3D	chr20	59931663	59945305
PPP1R3E_chr14_23290652_23307859	1/1	c0001	840	409	96	71	188	18	34	copy fasta	PPP1R3E	chr14	23290652	23307859
PPP1R3E_chr14_23290652_23307859	0/0	c0002	840	14	0	0	14	0	0	copy fasta	PPP1R3E	chr14	23290652	23307859
PPP1R3E_chr14_23290652_23307859	0/0	c0003	840	4	0	0	4	0	0	copy fasta	PPP1R3E	chr14	23290652	23307859