JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PPP1R3E_chr14_23290652_23307859	0/0	c0004	840	1	0	1	0	0	0	copy fasta	PPP1R3E	chr14	23290652	23307859
PPP1R3F_chrX_49264793_49293090	1/1	c0001	2400	225	41	39	105	11	27	copy fasta	PPP1R3F	chrX	49264793	49293090
PPP1R3F_chrX_49264793_49293090	0/0	c0002	2400	30	26	4	0	0	0	copy fasta	PPP1R3F	chrX	49264793	49293090
PPP1R3F_chrX_49264793_49293090	0/0	c0003	2400	8	0	8	0	0	0	copy fasta	PPP1R3F	chrX	49264793	49293090
PPP1R3F_chrX_49264793_49293090	0/0	c0004	2400	6	0	0	6	0	0	copy fasta	PPP1R3F	chrX	49264793	49293090
PPP1R3F_chrX_49264793_49293090	0/0	c0005	2400	2	2	0	0	0	0	copy fasta	PPP1R3F	chrX	49264793	49293090
PPP1R3F_chrX_49264793_49293090	0/0	c0006	2401	1	0	0	1	0	0	copy fasta	PPP1R3F	chrX	49264793	49293090
PPP1R3F_chrX_49264793_49293090	0/0	c0007	2403	1	0	0	1	0	0	copy fasta	PPP1R3F	chrX	49264793	49293090
PPP1R3F_chrX_49264793_49293090	0/0	c0008	2400	1	0	0	1	0	0	copy fasta	PPP1R3F	chrX	49264793	49293090
PPP1R3F_chrX_49264793_49293090	0/0	c0009	2401	1	0	0	1	0	0	copy fasta	PPP1R3F	chrX	49264793	49293090
PPP1R3F_chrX_49264793_49293090	0/0	c0010	2400	1	0	0	1	0	0	copy fasta	PPP1R3F	chrX	49264793	49293090
PPP1R3F_chrX_49264793_49293090	0/0	c0011	2390	1	0	0	1	0	0	copy fasta	PPP1R3F	chrX	49264793	49293090
PPP1R3F_chrX_49264793_49293090	0/0	c0012	2400	1	0	0	1	0	0	copy fasta	PPP1R3F	chrX	49264793	49293090
PPP1R3F_chrX_49264793_49293090	0/0	c0013	2400	1	1	0	0	0	0	copy fasta	PPP1R3F	chrX	49264793	49293090
PPP1R3F_chrX_49264793_49293090	0/0	c0014	2400	1	0	0	1	0	0	copy fasta	PPP1R3F	chrX	49264793	49293090
PPP1R3F_chrX_49264793_49293090	0/0	c0015	2411	1	0	0	1	0	0	copy fasta	PPP1R3F	chrX	49264793	49293090
PPP1R3F_chrX_49264793_49293090	0/0	c0016	2400	1	1	0	0	0	0	copy fasta	PPP1R3F	chrX	49264793	49293090
PPP1R3F_chrX_49264793_49293090	0/0	c0017	2400	1	0	0	1	0	0	copy fasta	PPP1R3F	chrX	49264793	49293090
PPP1R3F_chrX_49264793_49293090	0/0	c0018	2400	1	1	0	0	0	0	copy fasta	PPP1R3F	chrX	49264793	49293090
PPP1R3F_chrX_49264793_49293090	0/0	c0019	2400	1	0	1	0	0	0	copy fasta	PPP1R3F	chrX	49264793	49293090
PPP1R3F_chrX_49264793_49293090	0/0	c0020	2400	1	1	0	0	0	0	copy fasta	PPP1R3F	chrX	49264793	49293090
PPP1R3F_chrX_49264793_49293090	0/0	c0021	2400	1	0	0	0	0	1	copy fasta	PPP1R3F	chrX	49264793	49293090
PPP1R3F_chrX_49264793_49293090	0/0	c0022	2410	1	0	0	1	0	0	copy fasta	PPP1R3F	chrX	49264793	49293090
PPP1R3G_chr6_5080341_5094487	0/1	c0001	1077	286	36	59	141	13	36	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	c0002	1077	64	24	15	20	3	2	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	c0003	1077	16	14	2	0	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	c0004	1077	10	0	0	10	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	c0005	1077	7	7	0	0	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	c0006	1077	4	4	0	0	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	c0007	1077	3	0	0	3	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	c0008	1077	3	3	0	0	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	c0009	1077	2	2	0	0	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	c0010	1077	2	0	0	0	0	2	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	c0011	1077	2	1	1	0	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	c0012	1077	2	2	0	0	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	c0013	1077	1	0	0	1	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	c0014	1077	1	1	0	0	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	c0015	1077	1	1	0	0	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	c0016	1077	1	0	0	1	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	1/0	c0017	1077	1	0	0	0	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	c0018	1077	1	0	0	0	0	1	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	c0019	1077	1	0	1	0	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	c0020	1077	1	0	0	0	0	1	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	c0021	1077	1	1	0	0	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	c0022	1077	1	1	0	0	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	c0023	1077	1	1	0	0	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	c0024	1077	1	0	0	1	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	c0025	1077	1	0	0	1	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R42_chr8_66959103_67033554	1/1	c0001	816	130	61	20	27	6	14	copy fasta	PPP1R42	chr8	66959103	67033554
PPP1R42_chr8_66959103_67033554	0/0	c0002	816	1	1	0	0	0	0	copy fasta	PPP1R42	chr8	66959103	67033554