JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ARNT2_chr15_80399382_80602933	0/0	c0007	2154	1	0	0	1	0	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	c0008	2154	1	1	0	0	0	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	c0009	2154	1	1	0	0	0	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT2_chr15_80399382_80602933	0/0	c0010	2154	1	0	0	0	1	0	copy fasta	ARNT2	chr15	80399382	80602933
ARNT_chr1_150804713_150881599	1/0	c0001	2370	194	48	32	86	11	16	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/1	c0002	2370	123	33	21	51	5	12	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	c0003	2370	1	0	0	1	0	0	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	c0004	2370	1	0	0	0	0	1	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	c0005	2370	1	1	0	0	0	0	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	c0006	2370	1	0	0	1	0	0	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	c0007	2370	1	0	1	0	0	0	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	c0008	2370	1	1	0	0	0	0	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	c0009	2370	1	0	0	1	0	0	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	c0010	2370	1	1	0	0	0	0	copy fasta	ARNT	chr1	150804713	150881599
ARNT_chr1_150804713_150881599	0/0	c0011	2370	1	0	0	0	0	1	copy fasta	ARNT	chr1	150804713	150881599
ARPC1A_chr7_99320898_99371262	1/1	c0001	1113	307	85	39	129	12	40	copy fasta	ARPC1A	chr7	99320898	99371262
ARPC1A_chr7_99320898_99371262	0/0	c0002	1113	3	0	0	3	0	0	copy fasta	ARPC1A	chr7	99320898	99371262
ARPC1A_chr7_99320898_99371262	0/0	c0003	1113	3	3	0	0	0	0	copy fasta	ARPC1A	chr7	99320898	99371262
ARPC1A_chr7_99320898_99371262	0/0	c0004	1113	1	0	0	1	0	0	copy fasta	ARPC1A	chr7	99320898	99371262
ARPC1A_chr7_99320898_99371262	0/0	c0005	1113	1	0	1	0	0	0	copy fasta	ARPC1A	chr7	99320898	99371262
ARPC1A_chr7_99320898_99371262	0/0	c0006	1113	1	0	0	1	0	0	copy fasta	ARPC1A	chr7	99320898	99371262
ARPC1B_chr7_99369730_99399816	1/1	c0001	1119	234	11	34	136	12	39	copy fasta	ARPC1B	chr7	99369730	99399816
ARPC1B_chr7_99369730_99399816	0/0	c0002	1119	73	60	5	1	3	4	copy fasta	ARPC1B	chr7	99369730	99399816
ARPC1B_chr7_99369730_99399816	0/0	c0003	1119	25	15	1	7	1	1	copy fasta	ARPC1B	chr7	99369730	99399816
ARPC1B_chr7_99369730_99399816	0/0	c0004	1119	4	0	0	4	0	0	copy fasta	ARPC1B	chr7	99369730	99399816
ARPC1B_chr7_99369730_99399816	0/0	c0005	1119	3	0	0	3	0	0	copy fasta	ARPC1B	chr7	99369730	99399816
ARPC1B_chr7_99369730_99399816	0/0	c0006	1119	1	0	0	1	0	0	copy fasta	ARPC1B	chr7	99369730	99399816
ARPC2_chr2_218212189_218259348	1/1	c0001	903	324	84	69	125	12	32	copy fasta	ARPC2	chr2	218212189	218259348
ARPC2_chr2_218212189_218259348	0/0	c0002	903	5	0	1	4	0	0	copy fasta	ARPC2	chr2	218212189	218259348
ARPC2_chr2_218212189_218259348	0/0	c0003	903	2	2	0	0	0	0	copy fasta	ARPC2	chr2	218212189	218259348
ARPC2_chr2_218212189_218259348	0/0	c0004	977	1	0	0	1	0	0	copy fasta	ARPC2	chr2	218212189	218259348
ARPC3_chr12_110429823_110455337	1/1	c0001	537	333	88	68	124	15	36	copy fasta	ARPC3	chr12	110429823	110455337
ARPC3_chr12_110429823_110455337	0/0	c0002	545	1	0	0	0	1	0	copy fasta	ARPC3	chr12	110429823	110455337
ARPC4_chr3_9788082_9812101	1/1	c0001	507	443	94	68	215	18	46	copy fasta	ARPC4	chr3	9788082	9812101
ARPC4_chr3_9788082_9812101	0/0	c0002	507	1	1	0	0	0	0	copy fasta	ARPC4	chr3	9788082	9812101
ARPC4_chr3_9788082_9812101	0/0	c0003	507	1	0	0	1	0	0	copy fasta	ARPC4	chr3	9788082	9812101
ARPC4_chr3_9788082_9812101	0/0	c0004	507	1	1	0	0	0	0	copy fasta	ARPC4	chr3	9788082	9812101
ARPC5L_chr9_124857130_124882733	1/1	c0001	462	393	86	70	179	16	40	copy fasta	ARPC5L	chr9	124857130	124882733
ARPC5L_chr9_124857130_124882733	0/0	c0002	462	10	8	2	0	0	0	copy fasta	ARPC5L	chr9	124857130	124882733
ARPC5L_chr9_124857130_124882733	0/0	c0003	462	1	0	0	1	0	0	copy fasta	ARPC5L	chr9	124857130	124882733
ARPC5_chr1_183615846_183640783	1/1	c0001	456	333	77	66	142	10	36	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	c0002	456	28	18	2	6	0	2	copy fasta	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	c0003	456	3	3	0	0	0	0	copy fasta	ARPC5	chr1	183615846	183640783
ARPIN_chr15_89890006_89917952	1/1	c0001	681	411	95	83	171	18	42	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	c0002	681	2	1	1	0	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	c0003	681	1	0	0	1	0	0	copy fasta	ARPIN	chr15	89890006	89917952
ARPP19_chr15_52542045_52574030	1/1	c0001	339	422	96	72	192	14	46	copy fasta	ARPP19	chr15	52542045	52574030
ARPP21_chr3_35634525_35799486	0/1	c0001	2544	102	33	18	32	5	13	copy fasta	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	c0002	2544	70	28	11	19	4	8	copy fasta	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	1/0	c0003	2544	51	1	17	26	0	6	copy fasta	ARPP21	chr3	35634525	35799486