JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PPP1R42_chr8_66959103_67033554	0/0	c0003	816	1	0	0	1	0	0	copy fasta	PPP1R42	chr8	66959103	67033554
PPP1R7_chr2_241145467_241188652	1/1	c0001	1083	390	91	77	163	12	45	copy fasta	PPP1R7	chr2	241145467	241188652
PPP1R7_chr2_241145467_241188652	0/0	c0002	1083	3	0	0	3	0	0	copy fasta	PPP1R7	chr2	241145467	241188652
PPP1R7_chr2_241145467_241188652	0/0	c0003	1083	1	1	0	0	0	0	copy fasta	PPP1R7	chr2	241145467	241188652
PPP1R7_chr2_241145467_241188652	0/0	c0004	1083	1	0	1	0	0	0	copy fasta	PPP1R7	chr2	241145467	241188652
PPP1R7_chr2_241145467_241188652	0/0	c0005	1083	1	0	0	0	0	1	copy fasta	PPP1R7	chr2	241145467	241188652
PPP1R8_chr1_27825782_27856676	1/1	c0001	1056	331	83	67	132	12	35	copy fasta	PPP1R8	chr1	27825782	27856676
PPP1R8_chr1_27825782_27856676	0/0	c0002	1056	4	3	1	0	0	0	copy fasta	PPP1R8	chr1	27825782	27856676
PPP1R8_chr1_27825782_27856676	0/0	c0003	1056	2	2	0	0	0	0	copy fasta	PPP1R8	chr1	27825782	27856676
PPP1R8_chr1_27825782_27856676	0/0	c0004	1056	1	1	0	0	0	0	copy fasta	PPP1R8	chr1	27825782	27856676
PPP1R8_chr1_27825782_27856676	0/0	c0005	1056	1	0	0	0	0	1	copy fasta	PPP1R8	chr1	27825782	27856676
PPP1R8_chr1_27825782_27856676	0/0	c0006	1056	1	1	0	0	0	0	copy fasta	PPP1R8	chr1	27825782	27856676
PPP1R9A_chr7_94902594_95301400	1/1	c0001	4125	69	14	12	26	4	11	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	c0002	4125	39	14	10	7	4	4	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	c0003	4125	35	4	7	24	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	c0004	4125	22	0	6	13	0	3	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	c0005	4125	19	9	1	6	0	3	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	c0006	4125	18	4	4	7	1	2	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	c0007	4125	15	7	1	4	0	3	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	c0008	4125	10	4	1	5	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	c0009	4125	8	8	0	0	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	c0010	4125	8	0	1	7	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	c0011	4125	6	0	0	6	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	c0012	4125	6	4	2	0	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	c0013	4125	5	0	1	3	0	1	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	c0014	4125	3	0	3	0	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	c0015	4125	3	3	0	0	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	c0016	4125	3	3	0	0	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	c0017	4125	3	0	1	2	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	c0018	4125	2	0	1	0	1	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	c0019	4125	2	0	0	2	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	c0020	4125	2	1	1	0	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	c0021	4125	1	1	0	0	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	c0022	4125	1	1	0	0	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	c0023	4125	1	1	0	0	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	c0024	4125	1	1	0	0	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	c0025	4125	1	1	0	0	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	c0026	4125	1	1	0	0	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	c0027	4125	1	0	0	1	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	c0028	4125	1	0	0	1	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	c0029	4125	1	0	0	0	0	1	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	c0030	4125	1	1	0	0	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	c0031	4125	1	1	0	0	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	c0032	4125	1	1	0	0	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9B_chr17_50128737_50155677	1/0	c0001	2454	215	47	46	85	9	27	copy fasta	PPP1R9B	chr17	50128737	50155677
PPP1R9B_chr17_50128737_50155677	0/0	c0002	2454	88	4	14	57	1	12	copy fasta	PPP1R9B	chr17	50128737	50155677
PPP1R9B_chr17_50128737_50155677	0/1	c0003	2454	40	23	10	0	3	3	copy fasta	PPP1R9B	chr17	50128737	50155677
PPP1R9B_chr17_50128737_50155677	0/0	c0004	2454	13	5	1	5	0	2	copy fasta	PPP1R9B	chr17	50128737	50155677
PPP1R9B_chr17_50128737_50155677	0/0	c0005	2454	9	8	1	0	0	0	copy fasta	PPP1R9B	chr17	50128737	50155677
PPP1R9B_chr17_50128737_50155677	0/0	c0006	2454	7	1	2	0	1	3	copy fasta	PPP1R9B	chr17	50128737	50155677