JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PPP1R9B_chr17_50128737_50155677	0/0	c0007	2454	6	4	2	0	0	0	copy fasta	PPP1R9B	chr17	50128737	50155677
PPP1R9B_chr17_50128737_50155677	0/0	c0008	2454	2	2	0	0	0	0	copy fasta	PPP1R9B	chr17	50128737	50155677
PPP1R9B_chr17_50128737_50155677	0/0	c0009	2454	2	0	2	0	0	0	copy fasta	PPP1R9B	chr17	50128737	50155677
PPP1R9B_chr17_50128737_50155677	0/0	c0010	2454	2	0	0	2	0	0	copy fasta	PPP1R9B	chr17	50128737	50155677
PPP1R9B_chr17_50128737_50155677	0/0	c0011	2454	2	1	0	1	0	0	copy fasta	PPP1R9B	chr17	50128737	50155677
PPP1R9B_chr17_50128737_50155677	0/0	c0012	2454	1	0	0	0	0	1	copy fasta	PPP1R9B	chr17	50128737	50155677
PPP1R9B_chr17_50128737_50155677	0/0	c0013	2454	1	0	0	1	0	0	copy fasta	PPP1R9B	chr17	50128737	50155677
PPP1R9B_chr17_50128737_50155677	0/0	c0014	2454	1	0	0	1	0	0	copy fasta	PPP1R9B	chr17	50128737	50155677
PPP1R9B_chr17_50128737_50155677	0/0	c0015	2454	1	1	0	0	0	0	copy fasta	PPP1R9B	chr17	50128737	50155677
PPP1R9B_chr17_50128737_50155677	0/0	c0016	2454	1	0	0	1	0	0	copy fasta	PPP1R9B	chr17	50128737	50155677
PPP1R9B_chr17_50128737_50155677	0/0	c0017	2454	1	0	0	1	0	0	copy fasta	PPP1R9B	chr17	50128737	50155677
PPP2CA_chr5_134189332_134231073	1/1	c0001	930	361	85	60	165	12	37	copy fasta	PPP2CA	chr5	134189332	134231073
PPP2CA_chr5_134189332_134231073	0/0	c0002	930	1	0	0	1	0	0	copy fasta	PPP2CA	chr5	134189332	134231073
PPP2CA_chr5_134189332_134231073	0/0	c0003	930	1	0	0	0	0	1	copy fasta	PPP2CA	chr5	134189332	134231073
PPP2CA_chr5_134189332_134231073	0/0	c0004	930	1	1	0	0	0	0	copy fasta	PPP2CA	chr5	134189332	134231073
PPP2CB_chr8_30780616_30817818	1/1	c0001	930	299	90	53	109	10	35	copy fasta	PPP2CB	chr8	30780616	30817818
PPP2CB_chr8_30780616_30817818	0/0	c0002	930	2	0	0	2	0	0	copy fasta	PPP2CB	chr8	30780616	30817818
PPP2CB_chr8_30780616_30817818	0/0	c0003	930	1	0	0	1	0	0	copy fasta	PPP2CB	chr8	30780616	30817818
PPP2CB_chr8_30780616_30817818	0/0	c0004	930	1	0	1	0	0	0	copy fasta	PPP2CB	chr8	30780616	30817818
PPP2CB_chr8_30780616_30817818	0/0	c0005	930	1	0	0	0	0	1	copy fasta	PPP2CB	chr8	30780616	30817818
PPP2R1A_chr19_52185052_52234518	1/1	c0001	1770	345	73	72	138	16	44	copy fasta	PPP2R1A	chr19	52185052	52234518
PPP2R1A_chr19_52185052_52234518	0/0	c0002	1770	26	9	3	12	0	2	copy fasta	PPP2R1A	chr19	52185052	52234518
PPP2R1A_chr19_52185052_52234518	0/0	c0003	1770	8	5	1	0	0	2	copy fasta	PPP2R1A	chr19	52185052	52234518
PPP2R1A_chr19_52185052_52234518	0/0	c0004	1770	3	3	0	0	0	0	copy fasta	PPP2R1A	chr19	52185052	52234518
PPP2R1A_chr19_52185052_52234518	0/0	c0005	1770	1	0	0	1	0	0	copy fasta	PPP2R1A	chr19	52185052	52234518
PPP2R1A_chr19_52185052_52234518	0/0	c0006	1770	1	0	0	1	0	0	copy fasta	PPP2R1A	chr19	52185052	52234518
PPP2R1B_chr11_111732877_111771389	1/1	c0001	1806	338	88	74	128	10	36	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	c0002	1806	12	0	0	12	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	c0003	1806	2	0	2	0	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	c0004	1806	1	0	1	0	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	c0005	1806	1	1	0	0	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	c0006	1806	1	1	0	0	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	c0007	1806	1	0	1	0	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	c0008	1806	1	0	0	0	0	1	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	c0009	1806	1	0	0	0	0	1	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R2A_chr8_26286508_26377680	1/1	c0001	1344	320	86	60	125	10	37	copy fasta	PPP2R2A	chr8	26286508	26377680
PPP2R2A_chr8_26286508_26377680	0/0	c0002	1344	10	0	6	3	0	1	copy fasta	PPP2R2A	chr8	26286508	26377680
PPP2R2A_chr8_26286508_26377680	0/0	c0003	1344	8	0	0	8	0	0	copy fasta	PPP2R2A	chr8	26286508	26377680
PPP2R2A_chr8_26286508_26377680	0/0	c0004	1344	1	0	1	0	0	0	copy fasta	PPP2R2A	chr8	26286508	26377680
PPP2R2A_chr8_26286508_26377680	0/0	c0005	1344	1	0	1	0	0	0	copy fasta	PPP2R2A	chr8	26286508	26377680
PPP2R2B_chr5_146575742_146883757	1/1	c0001	1332	161	73	27	49	2	8	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	c0002	1332	6	0	3	3	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	c0003	1332	3	3	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2C_chr4_6315581_6477614	0/1	c0001	1344	189	41	38	78	8	23	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	1/0	c0002	1344	93	43	20	11	4	14	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	c0003	1344	7	6	1	0	0	0	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	c0004	1344	3	2	1	0	0	0	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	c0005	1344	2	0	2	0	0	0	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	c0006	1344	1	1	0	0	0	0	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	c0007	1344	1	1	0	0	0	0	copy fasta	PPP2R2C	chr4	6315581	6477614