JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PPP2R2C_chr4_6315581_6477614	0/0	c0008	1344	1	0	0	0	0	1	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	c0009	1344	1	0	0	1	0	0	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2D_chr10_131896008_131964834	1/1	c0001	1362	320	85	56	139	11	27	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	c0002	1362	71	7	11	37	4	12	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	c0003	1362	1	0	0	0	1	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	c0004	1362	1	0	1	0	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	c0005	1362	1	0	0	0	0	1	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R3A_chr3_135960728_136152894	1/0	c0001	3453	78	16	22	25	4	10	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/1	c0002	3453	66	36	10	8	3	8	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	c0003	3453	28	5	9	1	1	12	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	c0004	3453	20	0	2	18	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	c0005	3453	7	6	1	0	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	c0006	3453	7	0	3	0	1	3	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	c0007	3453	6	1	2	0	1	2	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	c0008	3457	4	4	0	0	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	c0009	3453	3	3	0	0	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	c0010	3453	2	2	0	0	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	c0011	3453	2	2	0	0	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	c0012	3453	2	2	0	0	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	c0013	3453	2	2	0	0	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	c0014	3453	2	0	2	0	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	c0015	3453	1	1	0	0	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	c0016	3453	1	1	0	0	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	c0017	3453	1	0	0	1	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	c0018	3453	1	1	0	0	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	c0019	3453	1	0	0	1	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	c0020	3453	1	0	1	0	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	c0021	3453	1	0	1	0	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	c0022	3453	1	0	1	0	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	c0023	3453	1	0	0	0	0	1	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3B_chrX_328933_391907	0/1	c0001	1728	9	2	0	1	1	4	copy fasta	PPP2R3B	chrX	328933	391907
PPP2R3B_chrX_328933_391907	0/0	c0002	1728	3	0	2	1	0	0	copy fasta	PPP2R3B	chrX	328933	391907
PPP2R3B_chrX_328933_391907	0/0	c0003	1728	2	0	1	1	0	0	copy fasta	PPP2R3B	chrX	328933	391907
PPP2R3B_chrX_328933_391907	0/0	c0004	1728	2	0	0	1	0	1	copy fasta	PPP2R3B	chrX	328933	391907
PPP2R3B_chrX_328933_391907	0/0	c0005	1727	1	1	0	0	0	0	copy fasta	PPP2R3B	chrX	328933	391907
PPP2R3B_chrX_328933_391907	0/0	c0006	1727	1	0	0	1	0	0	copy fasta	PPP2R3B	chrX	328933	391907
PPP2R3B_chrX_328933_391907	0/0	c0007	1728	1	0	0	1	0	0	copy fasta	PPP2R3B	chrX	328933	391907
PPP2R3B_chrX_328933_391907	0/0	c0008	1728	1	0	0	1	0	0	copy fasta	PPP2R3B	chrX	328933	391907
PPP2R3B_chrX_328933_391907	0/0	c0009	1729	1	0	1	0	0	0	copy fasta	PPP2R3B	chrX	328933	391907
PPP2R3B_chrX_328933_391907	0/0	c0010	1729	1	0	0	1	0	0	copy fasta	PPP2R3B	chrX	328933	391907
PPP2R3B_chrX_328933_391907	0/0	c0011	1728	1	0	0	1	0	0	copy fasta	PPP2R3B	chrX	328933	391907
PPP2R3B_chrX_328933_391907	0/0	c0012	1728	1	1	0	0	0	0	copy fasta	PPP2R3B	chrX	328933	391907
PPP2R3B_chrX_328933_391907	0/0	c0013	1728	1	1	0	0	0	0	copy fasta	PPP2R3B	chrX	328933	391907
PPP2R3C_chr14_35080472_35126990	1/1	c0001	1362	375	92	75	156	12	38	copy fasta	PPP2R3C	chr14	35080472	35126990
PPP2R3C_chr14_35080472_35126990	0/0	c0002	1362	1	1	0	0	0	0	copy fasta	PPP2R3C	chr14	35080472	35126990
PPP2R3C_chr14_35080472_35126990	0/0	c0003	1362	1	1	0	0	0	0	copy fasta	PPP2R3C	chr14	35080472	35126990
PPP2R3C_chr14_35080472_35126990	0/0	c0004	1362	1	0	1	0	0	0	copy fasta	PPP2R3C	chr14	35080472	35126990
PPP2R5A_chr1_212280410_212366853	1/0	c0001	1461	261	69	46	111	9	25	copy fasta	PPP2R5A	chr1	212280410	212366853
PPP2R5A_chr1_212280410_212366853	0/1	c0002	1461	107	9	17	63	4	13	copy fasta	PPP2R5A	chr1	212280410	212366853
PPP2R5A_chr1_212280410_212366853	0/0	c0003	1461	8	7	1	0	0	0	copy fasta	PPP2R5A	chr1	212280410	212366853