JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PPP2R5A_chr1_212280410_212366853	0/0	c0004	1461	4	0	0	4	0	0	copy fasta	PPP2R5A	chr1	212280410	212366853
PPP2R5A_chr1_212280410_212366853	0/0	c0005	1461	2	0	1	0	1	0	copy fasta	PPP2R5A	chr1	212280410	212366853
PPP2R5A_chr1_212280410_212366853	0/0	c0006	1461	1	1	0	0	0	0	copy fasta	PPP2R5A	chr1	212280410	212366853
PPP2R5A_chr1_212280410_212366853	0/0	c0007	1461	1	0	1	0	0	0	copy fasta	PPP2R5A	chr1	212280410	212366853
PPP2R5B_chr11_64919689_64939475	1/1	c0001	1494	394	89	76	168	16	43	copy fasta	PPP2R5B	chr11	64919689	64939475
PPP2R5B_chr11_64919689_64939475	0/0	c0002	1494	28	0	0	28	0	0	copy fasta	PPP2R5B	chr11	64919689	64939475
PPP2R5B_chr11_64919689_64939475	0/0	c0003	1494	1	1	0	0	0	0	copy fasta	PPP2R5B	chr11	64919689	64939475
PPP2R5B_chr11_64919689_64939475	0/0	c0004	1494	1	0	0	0	0	1	copy fasta	PPP2R5B	chr11	64919689	64939475
PPP2R5B_chr11_64919689_64939475	0/0	c0005	1442	1	0	0	1	0	0	copy fasta	PPP2R5B	chr11	64919689	64939475
PPP2R5B_chr11_64919689_64939475	0/0	c0006	1494	1	0	0	1	0	0	copy fasta	PPP2R5B	chr11	64919689	64939475
PPP2R5B_chr11_64919689_64939475	0/0	c0007	1494	1	0	0	1	0	0	copy fasta	PPP2R5B	chr11	64919689	64939475
PPP2R5B_chr11_64919689_64939475	0/0	c0008	1494	1	0	0	1	0	0	copy fasta	PPP2R5B	chr11	64919689	64939475
PPP2R5C_chr14_101756709_101932977	1/1	c0001	1740	90	32	19	24	3	10	copy fasta	PPP2R5C	chr14	101756709	101932977
PPP2R5C_chr14_101756709_101932977	0/0	c0002	1740	37	15	6	15	0	1	copy fasta	PPP2R5C	chr14	101756709	101932977
PPP2R5C_chr14_101756709_101932977	0/0	c0003	1740	9	7	0	0	1	1	copy fasta	PPP2R5C	chr14	101756709	101932977
PPP2R5C_chr14_101756709_101932977	0/0	c0004	1740	1	0	1	0	0	0	copy fasta	PPP2R5C	chr14	101756709	101932977
PPP2R5C_chr14_101756709_101932977	0/0	c0005	1740	1	0	0	1	0	0	copy fasta	PPP2R5C	chr14	101756709	101932977
PPP2R5D_chr6_42979570_43017342	1/1	c0001	1809	305	92	64	108	10	29	copy fasta	PPP2R5D	chr6	42979570	43017342
PPP2R5D_chr6_42979570_43017342	0/0	c0002	1809	1	0	0	0	0	1	copy fasta	PPP2R5D	chr6	42979570	43017342
PPP2R5E_chr14_63366364_63548377	1/1	c0001	1404	246	83	36	109	2	14	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	c0002	1404	4	4	0	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	c0003	1404	1	1	0	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	c0004	1404	1	0	0	1	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP3CA_chr4_101018418_101352526	1/1	c0001	1566	166	51	30	59	4	20	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	c0002	1566	17	16	1	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	c0003	1566	5	4	1	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	c0004	1566	2	1	1	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	c0005	1517	1	0	1	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	c0006	1566	1	0	0	1	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CB_chr10_73431433_73501024	1/1	c0001	1575	202	68	30	84	0	18	copy fasta	PPP3CB	chr10	73431433	73501024
PPP3CC_chr8_22436078_22546125	1/1	c0001	1539	315	83	48	134	12	36	copy fasta	PPP3CC	chr8	22436078	22546125
PPP3CC_chr8_22436078_22546125	0/0	c0002	1539	4	4	0	0	0	0	copy fasta	PPP3CC	chr8	22436078	22546125
PPP3CC_chr8_22436078_22546125	0/0	c0003	1539	3	3	0	0	0	0	copy fasta	PPP3CC	chr8	22436078	22546125
PPP3CC_chr8_22436078_22546125	0/0	c0004	1539	1	0	0	1	0	0	copy fasta	PPP3CC	chr8	22436078	22546125
PPP3CC_chr8_22436078_22546125	0/0	c0005	1539	1	0	1	0	0	0	copy fasta	PPP3CC	chr8	22436078	22546125
PPP3CC_chr8_22436078_22546125	0/0	c0006	1539	1	0	1	0	0	0	copy fasta	PPP3CC	chr8	22436078	22546125
PPP3CC_chr8_22436078_22546125	0/0	c0007	1539	1	0	0	1	0	0	copy fasta	PPP3CC	chr8	22436078	22546125
PPP3R1_chr2_68173857_68257532	1/1	c0001	513	218	48	36	108	8	16	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R1_chr2_68173857_68257532	0/0	c0002	513	179	44	38	73	4	20	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R1_chr2_68173857_68257532	0/0	c0003	513	1	0	0	1	0	0	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R2_chr9_101586604_101599969	1/1	c0001	513	446	96	77	209	18	44	copy fasta	PPP3R2	chr9	101586604	101599969
PPP3R2_chr9_101586604_101599969	0/0	c0002	513	1	0	1	0	0	0	copy fasta	PPP3R2	chr9	101586604	101599969
PPP3R2_chr9_101586604_101599969	0/0	c0003	513	1	0	0	1	0	0	copy fasta	PPP3R2	chr9	101586604	101599969
PPP4C_chr16_30070994_30090376	1/1	c0001	924	366	90	69	159	8	38	copy fasta	PPP4C	chr16	30070994	30090376
PPP4C_chr16_30070994_30090376	0/0	c0002	936	1	0	1	0	0	0	copy fasta	PPP4C	chr16	30070994	30090376
PPP4C_chr16_30070994_30090376	0/0	c0003	924	1	0	0	1	0	0	copy fasta	PPP4C	chr16	30070994	30090376
PPP4R1_chr18_9541794_9619559	1/1	c0001	2853	258	69	51	106	10	20	copy fasta	PPP4R1	chr18	9541794	9619559
PPP4R1_chr18_9541794_9619559	0/0	c0002	2853	107	14	18	59	4	12	copy fasta	PPP4R1	chr18	9541794	9619559
PPP4R1_chr18_9541794_9619559	0/0	c0003	2853	8	3	5	0	0	0	copy fasta	PPP4R1	chr18	9541794	9619559
PPP4R1_chr18_9541794_9619559	0/0	c0004	2853	4	4	0	0	0	0	copy fasta	PPP4R1	chr18	9541794	9619559