JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PPP4R1_chr18_9541794_9619559	0/0	c0005	2853	2	0	0	0	2	0	copy fasta	PPP4R1	chr18	9541794	9619559
PPP4R1_chr18_9541794_9619559	0/0	c0006	2853	2	0	0	2	0	0	copy fasta	PPP4R1	chr18	9541794	9619559
PPP4R1_chr18_9541794_9619559	0/0	c0007	2853	2	1	1	0	0	0	copy fasta	PPP4R1	chr18	9541794	9619559
PPP4R1_chr18_9541794_9619559	0/0	c0008	2853	1	1	0	0	0	0	copy fasta	PPP4R1	chr18	9541794	9619559
PPP4R1_chr18_9541794_9619559	0/0	c0009	2853	1	1	0	0	0	0	copy fasta	PPP4R1	chr18	9541794	9619559
PPP4R1_chr18_9541794_9619559	0/0	c0010	2853	1	0	1	0	0	0	copy fasta	PPP4R1	chr18	9541794	9619559
PPP4R1_chr18_9541794_9619559	0/0	c0011	2853	1	1	0	0	0	0	copy fasta	PPP4R1	chr18	9541794	9619559
PPP4R1_chr18_9541794_9619559	0/0	c0012	2853	1	0	0	1	0	0	copy fasta	PPP4R1	chr18	9541794	9619559
PPP4R2_chr3_72991811_73074198	1/1	c0001	1254	243	71	41	98	6	25	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	c0002	1254	97	10	7	61	2	17	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	c0003	1254	10	10	0	0	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	c0004	1254	2	2	0	0	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	c0005	1254	2	0	0	2	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	c0006	1254	1	1	0	0	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	c0007	1242	1	0	0	1	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	c0008	1254	1	0	0	1	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	c0009	1254	1	1	0	0	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	c0010	1254	1	1	0	0	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	c0011	1242	1	0	0	1	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R3A_chr14_91452508_91515310	1/1	c0001	2502	349	73	57	165	15	37	copy fasta	PPP4R3A	chr14	91452508	91515310
PPP4R3A_chr14_91452508_91515310	0/0	c0002	2502	9	2	4	0	1	2	copy fasta	PPP4R3A	chr14	91452508	91515310
PPP4R3A_chr14_91452508_91515310	0/0	c0003	2502	2	0	0	0	2	0	copy fasta	PPP4R3A	chr14	91452508	91515310
PPP4R3A_chr14_91452508_91515310	0/0	c0004	2502	2	0	0	2	0	0	copy fasta	PPP4R3A	chr14	91452508	91515310
PPP4R3A_chr14_91452508_91515310	0/0	c0005	2502	2	2	0	0	0	0	copy fasta	PPP4R3A	chr14	91452508	91515310
PPP4R3A_chr14_91452508_91515310	0/0	c0006	2502	2	2	0	0	0	0	copy fasta	PPP4R3A	chr14	91452508	91515310
PPP4R3A_chr14_91452508_91515310	0/0	c0007	2502	1	0	0	0	0	1	copy fasta	PPP4R3A	chr14	91452508	91515310
PPP4R3A_chr14_91452508_91515310	0/0	c0008	2502	1	0	1	0	0	0	copy fasta	PPP4R3A	chr14	91452508	91515310
PPP4R3A_chr14_91452508_91515310	0/0	c0009	2502	1	0	0	1	0	0	copy fasta	PPP4R3A	chr14	91452508	91515310
PPP4R3A_chr14_91452508_91515310	0/0	c0010	2502	1	1	0	0	0	0	copy fasta	PPP4R3A	chr14	91452508	91515310
PPP4R3B_chr2_55542292_55622622	0/1	c0001	2550	354	86	61	161	10	35	copy fasta	PPP4R3B	chr2	55542292	55622622
PPP4R3B_chr2_55542292_55622622	0/0	c0002	2550	17	3	2	5	0	7	copy fasta	PPP4R3B	chr2	55542292	55622622
PPP4R3B_chr2_55542292_55622622	0/0	c0003	2550	7	6	1	0	0	0	copy fasta	PPP4R3B	chr2	55542292	55622622
PPP4R3B_chr2_55542292_55622622	1/0	c0004	2550	1	0	0	0	0	0	copy fasta	PPP4R3B	chr2	55542292	55622622
PPP4R3B_chr2_55542292_55622622	0/0	c0005	2550	1	0	0	0	0	1	copy fasta	PPP4R3B	chr2	55542292	55622622
PPP4R3B_chr2_55542292_55622622	0/0	c0006	2550	1	0	0	0	0	1	copy fasta	PPP4R3B	chr2	55542292	55622622
PPP4R3B_chr2_55542292_55622622	0/0	c0007	2550	1	1	0	0	0	0	copy fasta	PPP4R3B	chr2	55542292	55622622
PPP4R3C_chrX_27455207_27468341	0/1	c0001	2499	166	10	42	82	6	25	copy fasta	PPP4R3C	chrX	27455207	27468341
PPP4R3C_chrX_27455207_27468341	1/0	c0002	2499	108	22	16	59	5	5	copy fasta	PPP4R3C	chrX	27455207	27468341
PPP4R3C_chrX_27455207_27468341	0/0	c0003	2499	13	13	0	0	0	0	copy fasta	PPP4R3C	chrX	27455207	27468341
PPP4R3C_chrX_27455207_27468341	0/0	c0004	2499	11	10	1	0	0	0	copy fasta	PPP4R3C	chrX	27455207	27468341
PPP4R3C_chrX_27455207_27468341	0/0	c0005	2499	11	10	1	0	0	0	copy fasta	PPP4R3C	chrX	27455207	27468341
PPP4R3C_chrX_27455207_27468341	0/0	c0006	2499	5	5	0	0	0	0	copy fasta	PPP4R3C	chrX	27455207	27468341
PPP4R3C_chrX_27455207_27468341	0/0	c0007	2499	4	4	0	0	0	0	copy fasta	PPP4R3C	chrX	27455207	27468341
PPP4R3C_chrX_27455207_27468341	0/0	c0008	2499	3	0	0	3	0	0	copy fasta	PPP4R3C	chrX	27455207	27468341
PPP4R3C_chrX_27455207_27468341	0/0	c0009	2499	2	0	0	0	0	2	copy fasta	PPP4R3C	chrX	27455207	27468341
PPP4R3C_chrX_27455207_27468341	0/0	c0010	2499	1	0	1	0	0	0	copy fasta	PPP4R3C	chrX	27455207	27468341
PPP4R3C_chrX_27455207_27468341	0/0	c0011	2499	1	1	0	0	0	0	copy fasta	PPP4R3C	chrX	27455207	27468341
PPP4R4_chr14_94169322_94284734	0/1	c0001	2622	291	83	50	114	8	35	copy fasta	PPP4R4	chr14	94169322	94284734
PPP4R4_chr14_94169322_94284734	0/0	c0002	2622	6	0	0	5	0	1	copy fasta	PPP4R4	chr14	94169322	94284734
PPP4R4_chr14_94169322_94284734	0/0	c0003	2622	3	3	0	0	0	0	copy fasta	PPP4R4	chr14	94169322	94284734