JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PPP4R4_chr14_94169322_94284734	0/0	c0004	2622	1	0	0	1	0	0	copy fasta	PPP4R4	chr14	94169322	94284734
PPP4R4_chr14_94169322_94284734	0/0	c0005	2622	1	0	1	0	0	0	copy fasta	PPP4R4	chr14	94169322	94284734
PPP4R4_chr14_94169322_94284734	0/0	c0006	2622	1	0	1	0	0	0	copy fasta	PPP4R4	chr14	94169322	94284734
PPP4R4_chr14_94169322_94284734	0/0	c0007	2622	1	0	0	1	0	0	copy fasta	PPP4R4	chr14	94169322	94284734
PPP4R4_chr14_94169322_94284734	0/0	c0008	2622	1	0	1	0	0	0	copy fasta	PPP4R4	chr14	94169322	94284734
PPP4R4_chr14_94169322_94284734	0/0	c0009	2622	1	0	0	1	0	0	copy fasta	PPP4R4	chr14	94169322	94284734
PPP4R4_chr14_94169322_94284734	0/0	c0010	2622	1	0	1	0	0	0	copy fasta	PPP4R4	chr14	94169322	94284734
PPP5C_chr19_46342087_46395975	1/0	c0001	1500	276	82	46	107	12	28	copy fasta	PPP5C	chr19	46342087	46395975
PPP5C_chr19_46342087_46395975	0/0	c0002	1500	60	2	14	39	3	2	copy fasta	PPP5C	chr19	46342087	46395975
PPP5C_chr19_46342087_46395975	0/1	c0003	1500	42	6	12	13	3	7	copy fasta	PPP5C	chr19	46342087	46395975
PPP5C_chr19_46342087_46395975	0/0	c0004	1500	5	0	0	5	0	0	copy fasta	PPP5C	chr19	46342087	46395975
PPP5C_chr19_46342087_46395975	0/0	c0005	1500	3	0	0	0	0	3	copy fasta	PPP5C	chr19	46342087	46395975
PPP5C_chr19_46342087_46395975	0/0	c0006	1500	2	0	0	2	0	0	copy fasta	PPP5C	chr19	46342087	46395975
PPP5C_chr19_46342087_46395975	0/0	c0007	1500	2	0	0	2	0	0	copy fasta	PPP5C	chr19	46342087	46395975
PPP5C_chr19_46342087_46395975	0/0	c0008	1500	1	0	0	0	0	1	copy fasta	PPP5C	chr19	46342087	46395975
PPP5C_chr19_46342087_46395975	0/0	c0009	1500	1	1	0	0	0	0	copy fasta	PPP5C	chr19	46342087	46395975
PPP5C_chr19_46342087_46395975	0/0	c0010	1500	1	0	0	0	0	1	copy fasta	PPP5C	chr19	46342087	46395975
PPP5C_chr19_46342087_46395975	0/0	c0011	1500	1	1	0	0	0	0	copy fasta	PPP5C	chr19	46342087	46395975
PPP6C_chr9_125141573_125194803	1/1	c0001	918	354	83	60	165	14	30	copy fasta	PPP6C	chr9	125141573	125194803
PPP6C_chr9_125141573_125194803	0/0	c0002	918	34	0	5	27	0	2	copy fasta	PPP6C	chr9	125141573	125194803
PPP6C_chr9_125141573_125194803	0/0	c0003	918	4	3	1	0	0	0	copy fasta	PPP6C	chr9	125141573	125194803
PPP6C_chr9_125141573_125194803	0/0	c0004	918	1	1	0	0	0	0	copy fasta	PPP6C	chr9	125141573	125194803
PPP6C_chr9_125141573_125194803	0/0	c0005	918	1	1	0	0	0	0	copy fasta	PPP6C	chr9	125141573	125194803
PPP6R1_chr19_55224779_55264017	1/1	c0001	2646	272	71	51	109	9	30	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	c0002	2646	55	4	17	16	5	13	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	c0003	2646	8	7	1	0	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	c0004	2646	6	6	0	0	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	c0005	2646	5	0	0	5	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	c0006	2646	3	0	3	0	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	c0007	2646	2	0	0	2	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	c0008	2646	2	2	0	0	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	c0009	2646	2	0	0	2	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	c0010	2646	2	0	0	2	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	c0011	2646	2	0	0	2	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	c0012	2646	2	2	0	0	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	c0013	2646	1	1	0	0	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	c0014	2646	1	1	0	0	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	c0015	2646	1	1	0	0	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	c0016	2646	1	1	0	0	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	c0017	2646	1	0	0	0	0	1	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	c0018	2646	1	0	0	0	0	1	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	c0019	2646	1	0	0	1	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	c0020	2646	1	1	0	0	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	c0021	2646	1	0	0	1	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	c0022	2646	1	0	1	0	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	c0023	2646	1	0	1	0	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	c0024	2646	1	1	0	0	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	c0025	2646	1	0	0	0	0	1	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	c0026	2646	1	0	0	1	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	c0027	2646	1	0	0	1	0	0	copy fasta	PPP6R1	chr19	55224779	55264017