JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PPP6R1_chr19_55224779_55264017	0/0	c0028	2646	1	0	0	1	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	c0029	2646	1	0	0	1	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R2_chr22_50338327_50450090	0/0	c0001	2880	90	8	13	57	4	8	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	1/0	c0002	2880	73	35	12	11	6	8	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	c0003	2880	50	7	12	23	4	4	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/1	c0004	2880	40	7	10	13	1	8	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	c0005	2880	14	0	0	14	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	c0006	2880	11	1	0	10	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	c0007	2880	10	1	4	0	1	4	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	c0008	2880	9	9	0	0	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	c0009	2880	5	4	0	1	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	c0010	2880	4	0	3	0	1	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	c0011	2880	4	4	0	0	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	c0012	2880	3	0	0	3	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	c0013	2880	3	0	2	0	0	1	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	c0014	2880	2	0	0	1	0	1	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	c0015	2880	2	1	1	0	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	c0016	2880	2	2	0	0	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	c0017	2880	2	2	0	0	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	c0018	2880	1	1	0	0	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	c0019	2880	1	1	0	0	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	c0020	2880	1	0	1	0	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	c0021	2880	1	0	0	1	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	c0022	2880	1	0	0	1	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	c0023	2880	1	0	0	0	1	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	c0024	2880	1	0	0	0	0	1	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	c0025	2880	1	0	0	0	0	1	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	c0026	2880	1	1	0	0	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	c0027	2880	1	0	1	0	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	c0028	2880	1	0	0	1	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	c0029	2880	1	0	1	0	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	c0030	2880	1	1	0	0	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	c0031	2880	1	1	0	0	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	c0032	2880	1	1	0	0	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	c0033	2880	1	1	0	0	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R3_chr11_68455752_68620334	1/1	c0001	2622	229	75	43	87	10	12	copy fasta	PPP6R3	chr11	68455752	68620334
PPP6R3_chr11_68455752_68620334	0/0	c0002	2622	15	15	0	0	0	0	copy fasta	PPP6R3	chr11	68455752	68620334
PPP6R3_chr11_68455752_68620334	0/0	c0003	2622	2	0	0	2	0	0	copy fasta	PPP6R3	chr11	68455752	68620334
PPP6R3_chr11_68455752_68620334	0/0	c0004	2622	2	0	0	2	0	0	copy fasta	PPP6R3	chr11	68455752	68620334
PPP6R3_chr11_68455752_68620334	0/0	c0005	2622	1	0	1	0	0	0	copy fasta	PPP6R3	chr11	68455752	68620334
PPP6R3_chr11_68455752_68620334	0/0	c0006	2622	1	1	0	0	0	0	copy fasta	PPP6R3	chr11	68455752	68620334
PPP6R3_chr11_68455752_68620334	0/0	c0007	2622	1	0	0	1	0	0	copy fasta	PPP6R3	chr11	68455752	68620334
PPP6R3_chr11_68455752_68620334	0/0	c0008	2622	1	1	0	0	0	0	copy fasta	PPP6R3	chr11	68455752	68620334
PPRC1_chr10_102128040_102155333	1/1	c0001	4995	274	59	54	111	14	34	copy fasta	PPRC1	chr10	102128040	102155333
PPRC1_chr10_102128040_102155333	0/0	c0002	4995	48	1	5	36	0	6	copy fasta	PPRC1	chr10	102128040	102155333
PPRC1_chr10_102128040_102155333	0/0	c0003	4995	17	12	5	0	0	0	copy fasta	PPRC1	chr10	102128040	102155333
PPRC1_chr10_102128040_102155333	0/0	c0004	4995	6	0	0	6	0	0	copy fasta	PPRC1	chr10	102128040	102155333
PPRC1_chr10_102128040_102155333	0/0	c0005	4995	5	5	0	0	0	0	copy fasta	PPRC1	chr10	102128040	102155333
PPRC1_chr10_102128040_102155333	0/0	c0006	4995	5	0	0	5	0	0	copy fasta	PPRC1	chr10	102128040	102155333
PPRC1_chr10_102128040_102155333	0/0	c0007	4995	5	0	0	5	0	0	copy fasta	PPRC1	chr10	102128040	102155333