JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PPRC1_chr10_102128040_102155333	0/0	c0008	4995	3	1	2	0	0	0	copy fasta	PPRC1	chr10	102128040	102155333
PPRC1_chr10_102128040_102155333	0/0	c0009	4995	2	0	2	0	0	0	copy fasta	PPRC1	chr10	102128040	102155333
PPRC1_chr10_102128040_102155333	0/0	c0010	4995	2	0	2	0	0	0	copy fasta	PPRC1	chr10	102128040	102155333
PPRC1_chr10_102128040_102155333	0/0	c0011	4995	2	2	0	0	0	0	copy fasta	PPRC1	chr10	102128040	102155333
PPRC1_chr10_102128040_102155333	0/0	c0012	4995	1	0	1	0	0	0	copy fasta	PPRC1	chr10	102128040	102155333
PPRC1_chr10_102128040_102155333	0/0	c0013	4995	1	0	0	0	0	1	copy fasta	PPRC1	chr10	102128040	102155333
PPRC1_chr10_102128040_102155333	0/0	c0014	4995	1	0	1	0	0	0	copy fasta	PPRC1	chr10	102128040	102155333
PPRC1_chr10_102128040_102155333	0/0	c0015	4995	1	1	0	0	0	0	copy fasta	PPRC1	chr10	102128040	102155333
PPRC1_chr10_102128040_102155333	0/0	c0016	4995	1	0	0	1	0	0	copy fasta	PPRC1	chr10	102128040	102155333
PPRC1_chr10_102128040_102155333	0/0	c0017	4995	1	1	0	0	0	0	copy fasta	PPRC1	chr10	102128040	102155333
PPRC1_chr10_102128040_102155333	0/0	c0018	4995	1	0	1	0	0	0	copy fasta	PPRC1	chr10	102128040	102155333
PPRC1_chr10_102128040_102155333	0/0	c0019	4995	1	0	0	0	0	1	copy fasta	PPRC1	chr10	102128040	102155333
PPRC1_chr10_102128040_102155333	0/0	c0020	4995	1	0	0	1	0	0	copy fasta	PPRC1	chr10	102128040	102155333
PPRC1_chr10_102128040_102155333	0/0	c0021	4995	1	0	0	1	0	0	copy fasta	PPRC1	chr10	102128040	102155333
PPRC1_chr10_102128040_102155333	0/0	c0022	4995	1	0	0	1	0	0	copy fasta	PPRC1	chr10	102128040	102155333
PPRC1_chr10_102128040_102155333	0/0	c0023	4995	1	1	0	0	0	0	copy fasta	PPRC1	chr10	102128040	102155333
PPRC1_chr10_102128040_102155333	0/0	c0024	4995	1	1	0	0	0	0	copy fasta	PPRC1	chr10	102128040	102155333
PPRC1_chr10_102128040_102155333	0/0	c0025	5007	1	0	0	1	0	0	copy fasta	PPRC1	chr10	102128040	102155333
PPRC1_chr10_102128040_102155333	0/0	c0026	4995	1	0	0	0	0	1	copy fasta	PPRC1	chr10	102128040	102155333
PPRC1_chr10_102128040_102155333	0/0	c0027	4995	1	0	1	0	0	0	copy fasta	PPRC1	chr10	102128040	102155333
PPRC1_chr10_102128040_102155333	0/0	c0028	4995	1	0	0	0	0	1	copy fasta	PPRC1	chr10	102128040	102155333
PPRC1_chr10_102128040_102155333	0/0	c0029	4995	1	1	0	0	0	0	copy fasta	PPRC1	chr10	102128040	102155333
PPRC1_chr10_102128040_102155333	0/0	c0030	4995	1	1	0	0	0	0	copy fasta	PPRC1	chr10	102128040	102155333
PPT1_chr1_40067712_40102252	1/1	c0001	921	357	84	53	162	17	39	copy fasta	PPT1	chr1	40067712	40102252
PPT1_chr1_40067712_40102252	0/0	c0002	921	31	1	1	21	1	7	copy fasta	PPT1	chr1	40067712	40102252
PPT1_chr1_40067712_40102252	0/0	c0003	921	7	7	0	0	0	0	copy fasta	PPT1	chr1	40067712	40102252
PPT1_chr1_40067712_40102252	0/0	c0004	921	1	0	0	1	0	0	copy fasta	PPT1	chr1	40067712	40102252
PPT2_chr6_32149141_32168675	0/1	c0001	909	342	68	71	164	12	26	copy fasta	PPT2	chr6	32149141	32168675
PPT2_chr6_32149141_32168675	0/0	c0002	909	41	17	7	3	4	10	copy fasta	PPT2	chr6	32149141	32168675
PPT2_chr6_32149141_32168675	0/0	c0003	909	38	4	2	26	0	6	copy fasta	PPT2	chr6	32149141	32168675
PPT2_chr6_32149141_32168675	0/0	c0004	909	1	1	0	0	0	0	copy fasta	PPT2	chr6	32149141	32168675
PPT2_chr6_32149141_32168675	0/0	c0005	898	1	0	0	1	0	0	copy fasta	PPT2	chr6	32149141	32168675
PPTC7_chr12_110528245_110588318	1/0	c0001	915	213	66	43	76	8	19	copy fasta	PPTC7	chr12	110528245	110588318
PPTC7_chr12_110528245_110588318	0/0	c0002	915	101	16	16	48	5	16	copy fasta	PPTC7	chr12	110528245	110588318
PPTC7_chr12_110528245_110588318	0/1	c0003	912	13	5	5	0	1	1	copy fasta	PPTC7	chr12	110528245	110588318
PPTC7_chr12_110528245_110588318	0/0	c0004	915	1	1	0	0	0	0	copy fasta	PPTC7	chr12	110528245	110588318
PPWD1_chr5_65558296_65592549	0/1	c0001	1941	224	64	45	81	9	24	copy fasta	PPWD1	chr5	65558296	65592549
PPWD1_chr5_65558296_65592549	1/0	c0002	1941	156	34	27	72	9	13	copy fasta	PPWD1	chr5	65558296	65592549
PPWD1_chr5_65558296_65592549	0/0	c0003	1941	2	0	2	0	0	0	copy fasta	PPWD1	chr5	65558296	65592549
PPWD1_chr5_65558296_65592549	0/0	c0004	1941	1	0	0	0	0	1	copy fasta	PPWD1	chr5	65558296	65592549
PPWD1_chr5_65558296_65592549	0/0	c0005	1941	1	0	0	1	0	0	copy fasta	PPWD1	chr5	65558296	65592549
PPY_chr17_43935804_43947476	1/1	c0001	288	359	78	71	156	16	36	copy fasta	PPY	chr17	43935804	43947476
PPY_chr17_43935804_43947476	0/0	c0002	288	18	17	1	0	0	0	copy fasta	PPY	chr17	43935804	43947476
PPY_chr17_43935804_43947476	0/0	c0003	288	1	1	0	0	0	0	copy fasta	PPY	chr17	43935804	43947476
PQBP1_chrX_48892930_48908143	1/1	c0001	798	298	77	58	121	13	27	copy fasta	PQBP1	chrX	48892930	48908143
PQBP1_chrX_48892930_48908143	0/0	c0002	798	3	0	0	3	0	0	copy fasta	PQBP1	chrX	48892930	48908143
PQBP1_chrX_48892930_48908143	0/0	c0003	796	1	0	0	1	0	0	copy fasta	PQBP1	chrX	48892930	48908143
PQBP1_chrX_48892930_48908143	0/0	c0004	797	1	0	0	1	0	0	copy fasta	PQBP1	chrX	48892930	48908143
PQBP1_chrX_48892930_48908143	0/0	c0005	799	1	0	0	0	0	1	copy fasta	PQBP1	chrX	48892930	48908143
PQBP1_chrX_48892930_48908143	0/0	c0006	798	1	0	0	1	0	0	copy fasta	PQBP1	chrX	48892930	48908143