JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PQBP1_chrX_48892930_48908143	0/0	c0007	800	1	0	0	1	0	0	copy fasta	PQBP1	chrX	48892930	48908143
PQBP1_chrX_48892930_48908143	0/0	c0008	795	1	0	0	1	0	0	copy fasta	PQBP1	chrX	48892930	48908143
PRAC1_chr17_48716719_48727518	1/1	c0001	174	421	88	72	195	18	46	copy fasta	PRAC1	chr17	48716719	48727518
PRAC1_chr17_48716719_48727518	0/0	c0002	174	1	1	0	0	0	0	copy fasta	PRAC1	chr17	48716719	48727518
PRAC1_chr17_48716719_48727518	0/0	c0003	174	1	0	0	1	0	0	copy fasta	PRAC1	chr17	48716719	48727518
PRAC1_chr17_48716719_48727518	0/0	c0004	174	1	1	0	0	0	0	copy fasta	PRAC1	chr17	48716719	48727518
PRAC2_chr17_48718185_48729758	0/0	c0001	273	223	44	35	115	6	23	copy fasta	PRAC2	chr17	48718185	48729758
PRAC2_chr17_48718185_48729758	1/1	c0002	273	203	39	41	88	10	23	copy fasta	PRAC2	chr17	48718185	48729758
PRAC2_chr17_48718185_48729758	0/0	c0003	273	6	6	0	0	0	0	copy fasta	PRAC2	chr17	48718185	48729758
PRAC2_chr17_48718185_48729758	0/0	c0004	273	1	1	0	0	0	0	copy fasta	PRAC2	chr17	48718185	48729758
PRAC2_chr17_48718185_48729758	0/0	c0005	273	1	0	0	1	0	0	copy fasta	PRAC2	chr17	48718185	48729758
PRADC1_chr2_73223010_73238239	1/1	c0001	567	338	74	60	162	12	28	copy fasta	PRADC1	chr2	73223010	73238239
PRADC1_chr2_73223010_73238239	0/0	c0002	567	32	24	7	0	1	0	copy fasta	PRADC1	chr2	73223010	73238239
PRADC1_chr2_73223010_73238239	0/0	c0003	567	5	0	5	0	0	0	copy fasta	PRADC1	chr2	73223010	73238239
PRADC1_chr2_73223010_73238239	0/0	c0004	567	1	0	0	1	0	0	copy fasta	PRADC1	chr2	73223010	73238239
PRADC1_chr2_73223010_73238239	0/0	c0005	567	1	0	0	0	1	0	copy fasta	PRADC1	chr2	73223010	73238239
PRADC1_chr2_73223010_73238239	0/0	c0006	567	1	0	0	1	0	0	copy fasta	PRADC1	chr2	73223010	73238239
PRAF2_chrX_49066161_49079002	1/1	c0001	537	266	76	50	99	11	28	copy fasta	PRAF2	chrX	49066161	49079002
PRAF2_chrX_49066161_49079002	0/0	c0002	537	1	0	0	1	0	0	copy fasta	PRAF2	chrX	49066161	49079002
PRAF2_chrX_49066161_49079002	0/0	c0003	538	1	0	0	1	0	0	copy fasta	PRAF2	chrX	49066161	49079002
PRAF2_chrX_49066161_49079002	0/0	c0004	540	1	0	0	1	0	0	copy fasta	PRAF2	chrX	49066161	49079002
PRAF2_chrX_49066161_49079002	0/0	c0005	537	1	0	0	1	0	0	copy fasta	PRAF2	chrX	49066161	49079002
PRAG1_chr8_8312736_8391439	0/0	c0001	4221	65	3	16	39	2	5	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0002	4209	53	5	16	18	4	10	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0003	4215	43	10	7	19	1	6	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0004	4215	29	6	1	17	1	4	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0005	4221	18	10	3	4	0	1	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/1	c0006	4215	17	2	11	0	1	2	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0007	4215	10	3	1	4	2	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0008	4215	9	1	2	6	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0009	4221	5	5	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0010	4209	5	4	1	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0011	4221	4	4	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0012	4222	4	0	1	2	1	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0013	4215	4	4	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0014	4221	4	4	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0015	4215	3	0	0	3	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0016	4221	3	3	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0017	4221	3	0	1	0	0	2	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0018	4221	2	0	0	2	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0019	4221	2	2	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0020	4221	2	0	1	0	0	1	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0021	4215	2	2	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0022	4221	2	0	0	1	0	1	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0023	4221	2	0	0	0	0	2	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0024	4215	2	2	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0025	4215	2	0	2	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0026	4215	2	0	0	0	1	1	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0027	4215	2	0	1	0	0	1	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0028	4209	1	0	0	1	0	0	copy fasta	PRAG1	chr8	8312736	8391439