JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRAG1_chr8_8312736_8391439	0/0	c0029	4222	1	1	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0030	4221	1	1	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0031	4215	1	1	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0032	4221	1	1	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0033	4215	1	1	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0034	4215	1	1	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0035	4221	1	1	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0036	4221	1	1	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0037	4215	1	1	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0038	4221	1	0	0	1	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0039	4222	1	0	1	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0040	4216	1	0	1	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0041	4215	1	1	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0042	4221	1	0	0	1	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0043	4221	1	0	1	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0044	4221	1	1	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0045	4221	1	1	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0046	4216	1	1	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0047	4215	1	1	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0048	4222	1	1	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	1/0	c0049	4221	1	0	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0050	4215	1	0	0	0	0	1	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0051	4221	1	1	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0052	4222	1	1	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0053	4221	1	0	0	1	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0054	4215	1	1	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0055	4215	1	0	0	1	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0056	4215	1	1	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0057	4216	1	0	0	0	0	1	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0058	4209	1	0	0	1	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0059	4215	1	0	0	0	1	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0060	4221	1	0	0	0	0	1	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0061	4209	1	0	0	1	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0062	4221	1	1	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0063	4221	1	0	0	0	0	1	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	c0064	4215	1	0	1	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAM1_chr19_8485056_8507640	0/1	c0001	2013	211	14	51	109	7	29	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0002	2157	23	1	7	8	2	5	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0003	2049	18	0	0	18	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0004	2157	12	0	6	0	0	6	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0005	2157	9	9	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0006	2013	8	0	3	4	1	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0007	2049	7	0	0	7	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0008	2013	5	0	0	5	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0009	2121	5	1	2	0	1	1	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0010	2229	5	5	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0011	2193	4	0	0	4	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0012	2013	4	0	0	4	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0013	2301	4	4	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0014	1977	3	0	1	2	0	0	copy fasta	PRAM1	chr19	8485056	8507640