Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ABCC8_chr11_17387885_17481845	0/0	c0044	4746	1	0	0	0	0	1	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0045	4746	1	0	0	0	0	1	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0046	4746	1	0	1	0	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0047	4746	1	0	0	1	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0048	4746	1	1	0	0	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0049	4746	1	0	1	0	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0050	4746	1	0	0	1	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0051	4746	1	0	0	1	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0052	4746	1	0	0	1	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0053	4746	1	0	0	0	0	1	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0054	4746	1	0	1	0	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0055	4746	1	1	0	0	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0056	4746	1	1	0	0	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0057	4746	1	0	0	1	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0058	4746	1	0	0	0	0	1	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0059	4746	1	0	1	0	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0060	4746	1	0	0	1	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0061	4746	1	1	0	0	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0062	4746	1	0	1	0	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0063	4746	1	1	0	0	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0064	4746	1	0	1	0	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0065	4746	1	1	0	0	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0066	4746	1	0	0	1	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0067	4746	1	1	0	0	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0068	4746	1	1	0	0	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/1	c0069	4746	1	0	0	0	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0070	4746	1	1	0	0	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0071	4746	1	1	0	0	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0072	4746	1	1	0	0	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0073	4746	1	1	0	0	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0074	4746	1	0	0	0	0	1	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0075	4746	1	1	0	0	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0076	4746	1	1	0	0	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0077	4746	1	0	1	0	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0078	4746	1	0	0	1	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0079	4746	1	1	0	0	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0080	4746	1	1	0	0	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0081	4746	1	1	0	0	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC9_chr12_21792389_21946426	1/1	c0001	4650	187	64	33	60	10	18	copy fasta	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	c0002	4650	5	5	0	0	0	0	copy fasta	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	c0003	4650	4	4	0	0	0	0	copy fasta	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	c0004	4650	3	0	0	3	0	0	copy fasta	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	c0005	4650	3	0	0	3	0	0	copy fasta	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	c0006	4650	3	3	0	0	0	0	copy fasta	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	c0007	4650	2	2	0	0	0	0	copy fasta	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	c0008	4650	1	1	0	0	0	0	copy fasta	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	c0009	4650	1	0	0	1	0	0	copy fasta	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	c0010	4650	1	0	0	1	0	0	copy fasta	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	c0011	4650	1	0	1	0	0	0	copy fasta	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	c0012	4650	1	1	0	0	0	0	copy fasta	ABCC9	chr12	21792389	21946426