JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ARPP21_chr3_35634525_35799486	0/0	c0004	2544	15	8	5	0	1	1	copy fasta	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	c0005	2544	14	5	4	3	2	0	copy fasta	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	c0006	2544	5	3	0	0	0	2	copy fasta	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	c0007	2544	2	2	0	0	0	0	copy fasta	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	c0008	2544	1	0	0	1	0	0	copy fasta	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	c0009	2544	1	0	1	0	0	0	copy fasta	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	c0010	2544	1	0	0	1	0	0	copy fasta	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	c0011	2544	1	1	0	0	0	0	copy fasta	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	c0012	2544	1	1	0	0	0	0	copy fasta	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	c0013	2544	1	0	0	0	0	1	copy fasta	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	c0014	2544	1	0	0	0	0	1	copy fasta	ARPP21	chr3	35634525	35799486
ARR3_chrX_70263334_70286840	1/1	c0001	1167	247	62	53	93	13	24	copy fasta	ARR3	chrX	70263334	70286840
ARR3_chrX_70263334_70286840	0/0	c0002	1167	68	10	2	46	0	10	copy fasta	ARR3	chrX	70263334	70286840
ARR3_chrX_70263334_70286840	0/0	c0003	1167	2	2	0	0	0	0	copy fasta	ARR3	chrX	70263334	70286840
ARR3_chrX_70263334_70286840	0/0	c0004	1168	1	0	0	1	0	0	copy fasta	ARR3	chrX	70263334	70286840
ARR3_chrX_70263334_70286840	0/0	c0005	1166	1	0	0	1	0	0	copy fasta	ARR3	chrX	70263334	70286840
ARRB1_chr11_75255122_75356661	1/0	c0001	1257	246	59	41	103	9	33	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/1	c0002	1257	60	23	11	15	5	5	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	c0003	1257	5	0	5	0	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	c0004	1257	3	3	0	0	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	c0005	1257	3	0	0	3	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	c0006	1257	1	0	1	0	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	c0007	1257	1	1	0	0	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB1_chr11_75255122_75356661	0/0	c0008	1257	1	0	0	1	0	0	copy fasta	ARRB1	chr11	75255122	75356661
ARRB2_chr17_4705632_4726497	0/1	c0001	1230	307	40	53	166	9	38	copy fasta	ARRB2	chr17	4705632	4726497
ARRB2_chr17_4705632_4726497	1/0	c0002	1230	116	52	18	30	5	10	copy fasta	ARRB2	chr17	4705632	4726497
ARRB2_chr17_4705632_4726497	0/0	c0003	1230	4	4	0	0	0	0	copy fasta	ARRB2	chr17	4705632	4726497
ARRB2_chr17_4705632_4726497	0/0	c0004	1230	2	0	0	0	0	2	copy fasta	ARRB2	chr17	4705632	4726497
ARRB2_chr17_4705632_4726497	0/0	c0005	1230	1	0	1	0	0	0	copy fasta	ARRB2	chr17	4705632	4726497
ARRB2_chr17_4705632_4726497	0/0	c0006	1230	1	0	0	1	0	0	copy fasta	ARRB2	chr17	4705632	4726497
ARRB2_chr17_4705632_4726497	0/0	c0007	1230	1	0	0	1	0	0	copy fasta	ARRB2	chr17	4705632	4726497
ARRDC1_chr9_137600686_137620360	1/1	c0001	1302	310	81	59	119	11	38	copy fasta	ARRDC1	chr9	137600686	137620360
ARRDC1_chr9_137600686_137620360	0/0	c0002	1302	15	7	5	0	2	1	copy fasta	ARRDC1	chr9	137600686	137620360
ARRDC1_chr9_137600686_137620360	0/0	c0003	1302	5	5	0	0	0	0	copy fasta	ARRDC1	chr9	137600686	137620360
ARRDC1_chr9_137600686_137620360	0/0	c0004	1302	1	0	0	1	0	0	copy fasta	ARRDC1	chr9	137600686	137620360
ARRDC1_chr9_137600686_137620360	0/0	c0005	1302	1	1	0	0	0	0	copy fasta	ARRDC1	chr9	137600686	137620360
ARRDC1_chr9_137600686_137620360	0/0	c0006	1302	1	0	0	1	0	0	copy fasta	ARRDC1	chr9	137600686	137620360
ARRDC1_chr9_137600686_137620360	0/0	c0007	1302	1	1	0	0	0	0	copy fasta	ARRDC1	chr9	137600686	137620360
ARRDC1_chr9_137600686_137620360	0/0	c0008	1302	1	0	0	1	0	0	copy fasta	ARRDC1	chr9	137600686	137620360
ARRDC1_chr9_137600686_137620360	0/0	c0009	1302	1	0	0	0	1	0	copy fasta	ARRDC1	chr9	137600686	137620360
ARRDC1_chr9_137600686_137620360	0/0	c0010	1302	1	1	0	0	0	0	copy fasta	ARRDC1	chr9	137600686	137620360
ARRDC1_chr9_137600686_137620360	0/0	c0011	1302	1	0	0	0	0	1	copy fasta	ARRDC1	chr9	137600686	137620360
ARRDC2_chr19_18003170_18019102	1/1	c0001	1224	275	37	61	122	13	40	copy fasta	ARRDC2	chr19	18003170	18019102
ARRDC2_chr19_18003170_18019102	0/0	c0002	1224	89	28	8	47	2	4	copy fasta	ARRDC2	chr19	18003170	18019102
ARRDC2_chr19_18003170_18019102	0/0	c0003	1224	19	12	3	0	2	2	copy fasta	ARRDC2	chr19	18003170	18019102
ARRDC2_chr19_18003170_18019102	0/0	c0004	1224	5	5	0	0	0	0	copy fasta	ARRDC2	chr19	18003170	18019102
ARRDC2_chr19_18003170_18019102	0/0	c0005	1224	4	4	0	0	0	0	copy fasta	ARRDC2	chr19	18003170	18019102
ARRDC2_chr19_18003170_18019102	0/0	c0006	1224	3	0	0	3	0	0	copy fasta	ARRDC2	chr19	18003170	18019102
ARRDC2_chr19_18003170_18019102	0/0	c0007	1224	3	3	0	0	0	0	copy fasta	ARRDC2	chr19	18003170	18019102
ARRDC2_chr19_18003170_18019102	0/0	c0008	1224	2	2	0	0	0	0	copy fasta	ARRDC2	chr19	18003170	18019102