JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRAM1_chr19_8485056_8507640	0/0	c0015	2193	3	3	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0016	2049	3	3	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0017	2013	3	0	0	3	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0018	2157	2	2	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0019	2118	2	2	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0020	2154	2	2	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0021	2121	2	2	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0022	2085	2	0	0	0	1	1	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0023	2085	2	0	1	1	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0024	2044	2	1	1	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0025	2044	2	2	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0026	2301	2	2	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0027	2193	2	2	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0028	2193	2	2	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0029	2193	2	2	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0030	2085	2	2	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0031	2085	2	2	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0032	2049	2	2	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0033	2049	2	0	1	1	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0034	2085	2	0	0	2	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0035	2121	2	2	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0036	2013	1	0	1	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0037	2193	1	1	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0038	2118	1	1	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0039	2013	1	0	0	0	1	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0040	2229	1	1	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0041	2229	1	1	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0042	2157	1	1	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0043	2121	1	1	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0044	2121	1	1	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0045	2121	1	1	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0046	2121	1	1	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0047	2049	1	0	1	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0048	2049	1	0	0	1	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0049	2013	1	0	0	1	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0050	2013	1	1	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0051	2013	1	0	0	1	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0052	2013	1	1	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0053	2013	1	1	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0054	2013	1	1	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0055	2013	1	0	0	0	0	1	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0056	2013	1	0	0	1	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0057	2013	1	0	0	1	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	1/0	c0058	2013	1	0	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0059	2013	1	0	0	0	0	1	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0060	2013	1	0	1	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0061	2013	1	0	0	1	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0062	2013	1	0	0	1	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0063	2049	1	0	0	1	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0064	2373	1	1	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640