JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRAM1_chr19_8485056_8507640	0/0	c0065	2157	1	0	0	0	0	1	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0066	2013	1	0	0	1	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0067	2157	1	1	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0068	2121	1	1	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0069	2445	1	1	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0070	2013	1	1	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0071	2049	1	1	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0072	2337	1	1	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0073	2265	1	1	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0074	2229	1	1	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0075	2193	1	1	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0076	2157	1	0	1	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0077	2157	1	1	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0078	2157	1	1	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0079	2154	1	1	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0080	2121	1	1	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0081	2121	1	1	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0082	2085	1	1	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0083	2085	1	1	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0084	2049	1	1	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0085	2049	1	1	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0086	2013	1	0	0	0	0	1	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0087	2010	1	0	0	0	0	1	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0088	1977	1	0	1	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0089	2013	1	1	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0090	2013	1	0	0	1	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0091	2229	1	0	0	0	1	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0092	2154	1	0	0	0	0	1	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0093	2085	1	0	0	1	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	c0094	2048	1	0	0	1	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAMEF10_chr1_12887896_12903270	0/0	c0001	1425	120	3	15	87	2	13	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	1/0	c0002	1425	42	1	8	23	2	7	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0003	1425	26	6	2	15	1	2	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0004	1425	15	0	5	5	0	5	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0005	1425	13	0	7	6	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0006	1425	11	1	3	3	1	3	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0007	1425	9	0	4	4	1	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0008	1425	8	1	6	0	0	1	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0009	1425	6	6	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0010	1425	6	5	1	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0011	1425	5	0	0	5	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0012	1425	5	0	0	5	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0013	1425	4	0	0	4	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0014	1425	4	0	0	2	1	1	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0015	1425	4	0	0	2	0	2	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0016	1425	3	0	3	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0017	1425	3	3	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0018	1425	3	3	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0019	1425	3	2	1	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0020	1425	3	1	0	0	0	2	copy fasta	PRAMEF10	chr1	12887896	12903270