JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRAMEF10_chr1_12887896_12903270	0/0	c0021	1425	3	2	1	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0022	1425	3	0	0	3	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0023	1425	3	0	3	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0024	1425	2	0	0	0	0	2	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0025	1425	2	2	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0026	1425	2	2	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0027	1425	2	0	0	0	2	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0028	1425	2	0	0	1	0	1	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0029	1425	2	0	0	2	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0030	1425	2	2	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0031	1425	2	0	0	0	1	1	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0032	1425	2	1	1	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0033	1425	2	2	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0034	1425	2	2	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0035	1425	2	0	0	0	2	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0036	1425	2	0	2	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0037	1425	2	0	0	2	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0038	1425	2	0	1	1	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0039	1425	2	0	1	1	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0040	1425	2	2	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0041	1425	1	1	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0042	1425	1	1	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0043	1425	1	1	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0044	1425	1	1	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0045	1425	1	0	1	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0046	1425	1	0	0	1	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0047	1425	1	0	0	1	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0048	1425	1	0	0	1	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0049	1425	1	1	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0050	1425	1	1	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0051	1425	1	1	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0052	1425	1	0	0	1	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0053	1425	1	0	0	1	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0054	1425	1	0	0	0	0	1	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0055	1425	1	0	0	1	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0056	1425	1	0	1	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0057	1425	1	0	1	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0058	1425	1	1	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0059	1425	1	0	0	0	1	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0060	1425	1	0	0	1	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0061	1425	1	1	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0062	1425	1	1	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0063	1425	1	1	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0064	1425	1	1	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0065	1425	1	0	0	0	0	1	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0066	1700	1	0	1	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0067	1701	1	0	1	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0068	1700	1	0	1	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0069	1425	1	1	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0070	1700	1	0	1	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270