JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRAMEF10_chr1_12887896_12903270	0/0	c0071	1425	1	0	1	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0072	1703	1	0	1	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0073	1425	1	0	0	1	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0074	1425	1	0	0	1	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0075	1425	1	1	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0076	1425	1	1	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0077	1425	1	0	1	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0078	1425	1	1	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0079	1425	1	1	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0080	1425	1	1	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	c0081	1425	1	1	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF11_chr1_12819605_12836410	0/0	c0001	1437	241	26	37	137	11	30	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/1	c0002	1437	58	4	10	36	1	6	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	c0003	1437	49	30	14	0	2	3	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	c0004	1437	8	7	1	0	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	c0005	1437	4	4	0	0	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	c0006	1437	3	0	0	0	0	3	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	c0007	1437	3	0	3	0	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	c0008	1437	3	3	0	0	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	c0009	1437	3	0	2	0	1	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	c0010	1437	3	2	1	0	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	c0011	1437	2	0	0	0	0	2	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	c0012	1437	2	0	0	2	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	c0013	1437	2	2	0	0	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	c0014	1437	2	0	1	1	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	c0015	1437	2	0	0	2	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	c0016	1437	1	0	0	0	1	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	c0017	1437	1	1	0	0	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	c0018	1437	1	1	0	0	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	c0019	1437	1	1	0	0	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	1/0	c0020	1437	1	0	0	0	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	c0021	1437	1	0	0	1	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	c0022	1437	1	0	0	1	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	c0023	1437	1	1	0	0	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	c0024	1437	1	1	0	0	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	c0025	1437	1	0	0	1	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	c0026	1437	1	0	0	0	0	1	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	c0027	1437	1	0	0	1	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	c0028	1437	1	0	0	0	0	1	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	c0029	1437	1	0	0	1	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	c0030	1437	1	1	0	0	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	c0031	1437	1	1	0	0	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	c0032	1437	1	0	1	0	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	c0033	1437	1	1	0	0	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	c0034	1437	1	0	0	1	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF12_chr1_12768738_12782906	1/0	c0001	1452	251	37	51	124	8	30	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/1	c0002	1452	95	27	14	39	3	11	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/0	c0003	1452	16	1	9	0	1	5	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/0	c0004	1452	9	9	0	0	0	0	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/0	c0005	1452	7	7	0	0	0	0	copy fasta	PRAMEF12	chr1	12768738	12782906