JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRAMEF12_chr1_12768738_12782906	0/0	c0006	1452	6	5	1	0	0	0	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/0	c0007	1452	2	0	2	0	0	0	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/0	c0008	1452	2	2	0	0	0	0	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/0	c0009	1452	1	1	0	0	0	0	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/0	c0010	1452	1	0	0	1	0	0	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/0	c0011	1452	1	0	0	0	0	1	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/0	c0012	1452	1	1	0	0	0	0	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/0	c0013	1452	1	0	0	0	0	1	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/0	c0014	1452	1	1	0	0	0	0	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/0	c0015	1452	1	0	0	1	0	0	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/0	c0016	1452	1	0	0	1	0	0	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/0	c0017	1452	1	0	1	0	0	0	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/0	c0018	1452	1	1	0	0	0	0	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/0	c0019	1452	1	1	0	0	0	0	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/0	c0020	1452	1	0	0	1	0	0	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/0	c0021	1452	1	0	0	1	0	0	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/0	c0022	1452	1	1	0	0	0	0	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF13_chr1_13191188_13206409	0/0	c0001	1425	19	11	1	3	0	4	copy fasta	PRAMEF13	chr1	13191188	13206409
PRAMEF13_chr1_13191188_13206409	1/0	c0002	1425	12	2	2	3	2	2	copy fasta	PRAMEF13	chr1	13191188	13206409
PRAMEF13_chr1_13191188_13206409	0/0	c0003	1425	3	0	1	0	0	2	copy fasta	PRAMEF13	chr1	13191188	13206409
PRAMEF13_chr1_13191188_13206409	0/0	c0004	1425	2	2	0	0	0	0	copy fasta	PRAMEF13	chr1	13191188	13206409
PRAMEF13_chr1_13191188_13206409	0/0	c0005	1425	2	0	0	0	0	2	copy fasta	PRAMEF13	chr1	13191188	13206409
PRAMEF13_chr1_13191188_13206409	0/0	c0006	1425	2	2	0	0	0	0	copy fasta	PRAMEF13	chr1	13191188	13206409
PRAMEF13_chr1_13191188_13206409	0/0	c0007	1425	2	2	0	0	0	0	copy fasta	PRAMEF13	chr1	13191188	13206409
PRAMEF13_chr1_13191188_13206409	0/0	c0008	1425	2	2	0	0	0	0	copy fasta	PRAMEF13	chr1	13191188	13206409
PRAMEF13_chr1_13191188_13206409	0/0	c0009	1425	1	1	0	0	0	0	copy fasta	PRAMEF13	chr1	13191188	13206409
PRAMEF13_chr1_13191188_13206409	0/0	c0010	1425	1	1	0	0	0	0	copy fasta	PRAMEF13	chr1	13191188	13206409
PRAMEF13_chr1_13191188_13206409	0/0	c0011	1425	1	0	0	0	0	1	copy fasta	PRAMEF13	chr1	13191188	13206409
PRAMEF13_chr1_13191188_13206409	0/0	c0012	1425	1	1	0	0	0	0	copy fasta	PRAMEF13	chr1	13191188	13206409
PRAMEF13_chr1_13191188_13206409	0/0	c0013	1425	1	1	0	0	0	0	copy fasta	PRAMEF13	chr1	13191188	13206409
PRAMEF13_chr1_13191188_13206409	0/0	c0014	1425	1	0	0	1	0	0	copy fasta	PRAMEF13	chr1	13191188	13206409
PRAMEF13_chr1_13191188_13206409	0/0	c0015	1425	1	0	0	1	0	0	copy fasta	PRAMEF13	chr1	13191188	13206409
PRAMEF13_chr1_13191188_13206409	0/0	c0016	1425	1	0	0	0	0	1	copy fasta	PRAMEF13	chr1	13191188	13206409
PRAMEF13_chr1_13191188_13206409	0/0	c0017	1425	1	1	0	0	0	0	copy fasta	PRAMEF13	chr1	13191188	13206409
PRAMEF14_chr1_13336892_13352134	1/1	c0001	1425	213	51	57	67	12	24	copy fasta	PRAMEF14	chr1	13336892	13352134
PRAMEF14_chr1_13336892_13352134	0/0	c0002	1425	23	13	1	9	0	0	copy fasta	PRAMEF14	chr1	13336892	13352134
PRAMEF14_chr1_13336892_13352134	0/0	c0003	1425	4	4	0	0	0	0	copy fasta	PRAMEF14	chr1	13336892	13352134
PRAMEF14_chr1_13336892_13352134	0/0	c0004	1425	2	0	0	0	0	2	copy fasta	PRAMEF14	chr1	13336892	13352134
PRAMEF14_chr1_13336892_13352134	0/0	c0005	1425	2	1	0	1	0	0	copy fasta	PRAMEF14	chr1	13336892	13352134
PRAMEF14_chr1_13336892_13352134	0/0	c0006	1425	1	0	0	1	0	0	copy fasta	PRAMEF14	chr1	13336892	13352134
PRAMEF14_chr1_13336892_13352134	0/0	c0007	1425	1	1	0	0	0	0	copy fasta	PRAMEF14	chr1	13336892	13352134
PRAMEF14_chr1_13336892_13352134	0/0	c0008	1425	1	0	0	1	0	0	copy fasta	PRAMEF14	chr1	13336892	13352134
PRAMEF14_chr1_13336892_13352134	0/0	c0009	1425	1	0	1	0	0	0	copy fasta	PRAMEF14	chr1	13336892	13352134
PRAMEF14_chr1_13336892_13352134	0/0	c0010	1425	1	1	0	0	0	0	copy fasta	PRAMEF14	chr1	13336892	13352134
PRAMEF14_chr1_13336892_13352134	0/0	c0011	1406	1	0	0	1	0	0	copy fasta	PRAMEF14	chr1	13336892	13352134
PRAMEF14_chr1_13336892_13352134	0/0	c0012	1425	1	1	0	0	0	0	copy fasta	PRAMEF14	chr1	13336892	13352134
PRAMEF14_chr1_13336892_13352134	0/0	c0013	1425	1	0	0	0	0	1	copy fasta	PRAMEF14	chr1	13336892	13352134
PRAMEF14_chr1_13336892_13352134	0/0	c0014	1425	1	1	0	0	0	0	copy fasta	PRAMEF14	chr1	13336892	13352134
PRAMEF14_chr1_13336892_13352134	0/0	c0015	1425	1	0	1	0	0	0	copy fasta	PRAMEF14	chr1	13336892	13352134
PRAMEF14_chr1_13336892_13352134	0/0	c0016	1425	1	1	0	0	0	0	copy fasta	PRAMEF14	chr1	13336892	13352134