JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRAMEF14_chr1_13336892_13352134	0/0	c0017	1425	1	0	0	0	0	1	copy fasta	PRAMEF14	chr1	13336892	13352134
PRAMEF15_chr1_13310581_13327598	1/1	c0001	1437	249	50	57	102	11	27	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF15_chr1_13310581_13327598	0/0	c0002	1437	6	0	0	6	0	0	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF15_chr1_13310581_13327598	0/0	c0003	1437	5	5	0	0	0	0	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF15_chr1_13310581_13327598	0/0	c0004	1437	5	5	0	0	0	0	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF15_chr1_13310581_13327598	0/0	c0005	1437	5	0	3	0	1	1	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF15_chr1_13310581_13327598	0/0	c0006	1437	4	4	0	0	0	0	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF15_chr1_13310581_13327598	0/0	c0007	1437	3	3	0	0	0	0	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF15_chr1_13310581_13327598	0/0	c0008	1437	2	1	1	0	0	0	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF15_chr1_13310581_13327598	0/0	c0009	1437	2	2	0	0	0	0	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF15_chr1_13310581_13327598	0/0	c0010	1437	2	0	0	2	0	0	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF15_chr1_13310581_13327598	0/0	c0011	1437	2	0	0	1	0	1	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF15_chr1_13310581_13327598	0/0	c0012	1437	2	1	0	1	0	0	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF15_chr1_13310581_13327598	0/0	c0013	1437	1	1	0	0	0	0	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF15_chr1_13310581_13327598	0/0	c0014	1437	1	1	0	0	0	0	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF15_chr1_13310581_13327598	0/0	c0015	1437	1	1	0	0	0	0	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF15_chr1_13310581_13327598	0/0	c0016	1437	1	1	0	0	0	0	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF15_chr1_13310581_13327598	0/0	c0017	1437	1	1	0	0	0	0	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF15_chr1_13310581_13327598	0/0	c0018	1437	1	0	0	0	0	1	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF15_chr1_13310581_13327598	0/0	c0019	1437	1	1	0	0	0	0	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF15_chr1_13310581_13327598	0/0	c0020	1437	1	0	0	0	0	1	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF15_chr1_13310581_13327598	0/0	c0021	1437	1	0	0	0	0	1	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF15_chr1_13310581_13327598	0/0	c0022	1437	1	1	0	0	0	0	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF15_chr1_13310581_13327598	0/0	c0023	1437	1	0	1	0	0	0	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF15_chr1_13310581_13327598	0/0	c0024	1437	1	1	0	0	0	0	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF15_chr1_13310581_13327598	0/0	c0025	1437	1	0	1	0	0	0	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF15_chr1_13310581_13327598	0/0	c0026	1437	1	0	1	0	0	0	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF15_chr1_13310581_13327598	0/0	c0027	1437	1	1	0	0	0	0	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF17_chr1_13384632_13397629	1/1	c0001	1425	223	65	34	84	11	27	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	c0002	1425	91	3	24	56	3	5	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	c0003	1425	25	1	3	18	1	2	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	c0004	1425	21	6	6	7	1	1	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	c0005	1425	17	13	1	1	0	2	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	c0006	1425	9	0	0	9	0	0	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	c0007	1425	6	4	1	0	1	0	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	c0008	1425	6	0	0	0	0	6	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	c0009	1425	5	0	3	1	1	0	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	c0010	1425	2	0	0	2	0	0	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	c0011	1425	2	0	0	2	0	0	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	c0012	1425	1	1	0	0	0	0	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	c0013	1425	1	0	0	1	0	0	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	c0014	1425	1	0	0	1	0	0	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	c0015	1425	1	0	0	0	0	1	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	c0016	1425	1	0	0	1	0	0	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	c0017	1425	1	0	0	1	0	0	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	c0018	1425	1	0	0	1	0	0	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	c0019	1425	1	0	0	1	0	0	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	c0020	1425	1	1	0	0	0	0	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	c0021	1425	1	1	0	0	0	0	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	c0022	1425	1	0	0	1	0	0	copy fasta	PRAMEF17	chr1	13384632	13397629