JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRAMEF17_chr1_13384632_13397629	0/0	c0023	1425	1	1	0	0	0	0	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	c0024	1425	1	0	0	1	0	0	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	c0025	1425	1	1	0	0	0	0	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	c0026	1425	1	0	0	1	0	0	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	c0027	1425	1	0	1	0	0	0	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	c0028	1425	1	0	0	1	0	0	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	c0029	1425	1	0	0	1	0	0	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	c0030	1425	1	0	0	1	0	0	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	c0031	1425	1	0	0	1	0	0	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	c0032	1425	1	0	1	0	0	0	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	c0033	1425	1	1	0	0	0	0	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	c0034	1425	1	0	0	1	0	0	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF18_chr1_13217695_13231154	0/1	c0001	1440	202	44	36	90	6	25	copy fasta	PRAMEF18	chr1	13217695	13231154
PRAMEF18_chr1_13217695_13231154	0/0	c0002	1440	17	1	1	14	0	1	copy fasta	PRAMEF18	chr1	13217695	13231154
PRAMEF18_chr1_13217695_13231154	0/0	c0003	1440	14	0	0	12	0	2	copy fasta	PRAMEF18	chr1	13217695	13231154
PRAMEF18_chr1_13217695_13231154	0/0	c0004	1440	4	3	1	0	0	0	copy fasta	PRAMEF18	chr1	13217695	13231154
PRAMEF18_chr1_13217695_13231154	0/0	c0005	1440	3	0	0	3	0	0	copy fasta	PRAMEF18	chr1	13217695	13231154
PRAMEF18_chr1_13217695_13231154	0/0	c0006	1440	3	3	0	0	0	0	copy fasta	PRAMEF18	chr1	13217695	13231154
PRAMEF18_chr1_13217695_13231154	0/0	c0007	1440	2	0	2	0	0	0	copy fasta	PRAMEF18	chr1	13217695	13231154
PRAMEF18_chr1_13217695_13231154	0/0	c0008	1440	2	2	0	0	0	0	copy fasta	PRAMEF18	chr1	13217695	13231154
PRAMEF18_chr1_13217695_13231154	0/0	c0009	1440	2	2	0	0	0	0	copy fasta	PRAMEF18	chr1	13217695	13231154
PRAMEF18_chr1_13217695_13231154	0/0	c0010	1440	2	0	0	2	0	0	copy fasta	PRAMEF18	chr1	13217695	13231154
PRAMEF18_chr1_13217695_13231154	0/0	c0011	1440	1	1	0	0	0	0	copy fasta	PRAMEF18	chr1	13217695	13231154
PRAMEF18_chr1_13217695_13231154	0/0	c0012	1440	1	1	0	0	0	0	copy fasta	PRAMEF18	chr1	13217695	13231154
PRAMEF18_chr1_13217695_13231154	0/0	c0013	1440	1	1	0	0	0	0	copy fasta	PRAMEF18	chr1	13217695	13231154
PRAMEF18_chr1_13217695_13231154	0/0	c0014	1440	1	0	1	0	0	0	copy fasta	PRAMEF18	chr1	13217695	13231154
PRAMEF18_chr1_13217695_13231154	0/0	c0015	1440	1	0	0	1	0	0	copy fasta	PRAMEF18	chr1	13217695	13231154
PRAMEF18_chr1_13217695_13231154	0/0	c0016	1440	1	1	0	0	0	0	copy fasta	PRAMEF18	chr1	13217695	13231154
PRAMEF18_chr1_13217695_13231154	0/0	c0017	1440	1	0	1	0	0	0	copy fasta	PRAMEF18	chr1	13217695	13231154
PRAMEF18_chr1_13217695_13231154	0/0	c0018	1440	1	0	0	1	0	0	copy fasta	PRAMEF18	chr1	13217695	13231154
PRAMEF18_chr1_13217695_13231154	0/0	c0019	1440	1	1	0	0	0	0	copy fasta	PRAMEF18	chr1	13217695	13231154
PRAMEF18_chr1_13217695_13231154	0/0	c0020	1440	1	0	0	0	1	0	copy fasta	PRAMEF18	chr1	13217695	13231154
PRAMEF18_chr1_13217695_13231154	0/0	c0021	1440	1	0	1	0	0	0	copy fasta	PRAMEF18	chr1	13217695	13231154
PRAMEF18_chr1_13217695_13231154	0/0	c0022	1440	1	0	0	1	0	0	copy fasta	PRAMEF18	chr1	13217695	13231154
PRAMEF18_chr1_13217695_13231154	0/0	c0023	1440	1	0	1	0	0	0	copy fasta	PRAMEF18	chr1	13217695	13231154
PRAMEF18_chr1_13217695_13231154	0/0	c0024	1440	1	0	0	0	1	0	copy fasta	PRAMEF18	chr1	13217695	13231154
PRAMEF19_chr1_13363431_13376947	0/1	c0001	1440	285	70	53	111	15	35	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF19_chr1_13363431_13376947	1/0	c0002	1440	62	7	9	43	0	2	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF19_chr1_13363431_13376947	0/0	c0003	1440	57	0	0	53	0	4	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF19_chr1_13363431_13376947	0/0	c0004	1440	8	0	3	0	1	4	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF19_chr1_13363431_13376947	0/0	c0005	1440	6	1	1	0	1	3	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF19_chr1_13363431_13376947	0/0	c0006	1440	6	4	2	0	0	0	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF19_chr1_13363431_13376947	0/0	c0007	1440	4	4	0	0	0	0	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF19_chr1_13363431_13376947	0/0	c0008	1440	3	3	0	0	0	0	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF19_chr1_13363431_13376947	0/0	c0009	1440	3	0	0	3	0	0	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF19_chr1_13363431_13376947	0/0	c0010	1440	3	3	0	0	0	0	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF19_chr1_13363431_13376947	0/0	c0011	1440	2	2	0	0	0	0	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF19_chr1_13363431_13376947	0/0	c0012	1440	2	0	0	0	1	1	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF19_chr1_13363431_13376947	0/0	c0013	1440	1	1	0	0	0	0	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF19_chr1_13363431_13376947	0/0	c0014	1440	1	1	0	0	0	0	copy fasta	PRAMEF19	chr1	13363431	13376947