JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRAMEF19_chr1_13363431_13376947	0/0	c0015	1440	1	1	0	0	0	0	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF19_chr1_13363431_13376947	0/0	c0016	1440	1	0	0	1	0	0	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF19_chr1_13363431_13376947	0/0	c0017	1440	1	1	0	0	0	0	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF19_chr1_13363431_13376947	0/0	c0018	1440	1	0	0	1	0	0	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF19_chr1_13363431_13376947	0/0	c0019	1440	1	0	0	1	0	0	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF19_chr1_13363431_13376947	0/0	c0020	1440	1	0	0	1	0	0	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF19_chr1_13363431_13376947	0/0	c0021	1440	1	0	0	0	0	1	copy fasta	PRAMEF19	chr1	13363431	13376947
PRAMEF1_chr1_12786397_12801628	1/0	c0001	1425	167	59	44	44	6	13	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	c0002	1425	104	7	18	69	1	9	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/1	c0003	1425	52	3	9	29	2	8	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	c0004	1425	7	0	5	0	1	1	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	c0005	1425	6	6	0	0	0	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	c0006	1425	5	0	1	4	0	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	c0007	1425	5	0	0	5	0	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	c0008	1425	4	4	0	0	0	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	c0009	1425	4	0	0	0	0	4	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	c0010	1425	3	0	0	0	0	3	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	c0011	1425	3	0	0	3	0	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	c0012	1425	3	2	1	0	0	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	c0013	1425	2	2	0	0	0	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	c0014	1425	2	0	0	2	0	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	c0015	1425	1	0	0	1	0	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	c0016	1425	1	1	0	0	0	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	c0017	1425	1	0	0	1	0	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	c0018	1425	1	0	1	0	0	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	c0019	1425	1	0	0	1	0	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	c0020	1425	1	0	0	0	0	1	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	c0021	1425	1	1	0	0	0	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	c0022	1425	1	1	0	0	0	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	c0023	1425	1	0	0	0	1	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	c0024	1425	1	0	1	0	0	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	c0025	1425	1	0	0	0	0	1	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	c0026	1425	1	1	0	0	0	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	c0027	1425	1	0	0	1	0	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	c0028	1425	1	0	0	0	1	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	c0029	1425	1	1	0	0	0	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF20_chr1_13405450_13426328	0/0	c0001	1428	190	63	24	68	12	23	copy fasta	PRAMEF20	chr1	13405450	13426328
PRAMEF20_chr1_13405450_13426328	0/0	c0002	1428	98	7	9	66	3	13	copy fasta	PRAMEF20	chr1	13405450	13426328
PRAMEF20_chr1_13405450_13426328	1/0	c0003	1428	96	4	34	47	2	8	copy fasta	PRAMEF20	chr1	13405450	13426328
PRAMEF20_chr1_13405450_13426328	0/0	c0004	1428	24	8	4	10	1	1	copy fasta	PRAMEF20	chr1	13405450	13426328
PRAMEF20_chr1_13405450_13426328	0/0	c0005	1428	5	0	0	5	0	0	copy fasta	PRAMEF20	chr1	13405450	13426328
PRAMEF20_chr1_13405450_13426328	0/0	c0006	1428	4	4	0	0	0	0	copy fasta	PRAMEF20	chr1	13405450	13426328
PRAMEF20_chr1_13405450_13426328	0/0	c0007	1428	4	4	0	0	0	0	copy fasta	PRAMEF20	chr1	13405450	13426328
PRAMEF20_chr1_13405450_13426328	0/0	c0008	1428	4	1	1	2	0	0	copy fasta	PRAMEF20	chr1	13405450	13426328
PRAMEF20_chr1_13405450_13426328	0/0	c0009	1428	4	0	0	3	0	1	copy fasta	PRAMEF20	chr1	13405450	13426328
PRAMEF20_chr1_13405450_13426328	0/0	c0010	1428	2	0	0	0	0	2	copy fasta	PRAMEF20	chr1	13405450	13426328
PRAMEF20_chr1_13405450_13426328	0/0	c0011	1428	2	0	0	1	0	1	copy fasta	PRAMEF20	chr1	13405450	13426328
PRAMEF20_chr1_13405450_13426328	0/1	c0012	1428	1	0	0	0	0	0	copy fasta	PRAMEF20	chr1	13405450	13426328
PRAMEF20_chr1_13405450_13426328	0/0	c0013	1428	1	0	1	0	0	0	copy fasta	PRAMEF20	chr1	13405450	13426328
PRAMEF20_chr1_13405450_13426328	0/0	c0014	1428	1	0	1	0	0	0	copy fasta	PRAMEF20	chr1	13405450	13426328