JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRAMEF26_chr1_13143907_13161009	0/0	c0016	1437	1	0	1	0	0	0	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF26_chr1_13143907_13161009	0/0	c0017	1437	1	0	0	0	0	1	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF26_chr1_13143907_13161009	0/0	c0018	1437	1	0	1	0	0	0	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF26_chr1_13143907_13161009	0/0	c0019	1437	1	1	0	0	0	0	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF26_chr1_13143907_13161009	0/0	c0020	1437	1	1	0	0	0	0	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF27_chr1_13044476_13061575	0/0	c0001	1437	101	2	33	59	6	1	copy fasta	PRAMEF27	chr1	13044476	13061575
PRAMEF27_chr1_13044476_13061575	0/0	c0002	1437	3	0	0	3	0	0	copy fasta	PRAMEF27	chr1	13044476	13061575
PRAMEF27_chr1_13044476_13061575	0/0	c0003	1437	3	0	0	3	0	0	copy fasta	PRAMEF27	chr1	13044476	13061575
PRAMEF27_chr1_13044476_13061575	0/0	c0004	1437	3	0	1	0	2	0	copy fasta	PRAMEF27	chr1	13044476	13061575
PRAMEF27_chr1_13044476_13061575	0/0	c0005	1437	2	0	2	0	0	0	copy fasta	PRAMEF27	chr1	13044476	13061575
PRAMEF27_chr1_13044476_13061575	0/0	c0006	1437	1	0	1	0	0	0	copy fasta	PRAMEF27	chr1	13044476	13061575
PRAMEF27_chr1_13044476_13061575	0/0	c0007	1437	1	0	1	0	0	0	copy fasta	PRAMEF27	chr1	13044476	13061575
PRAMEF27_chr1_13044476_13061575	0/0	c0008	1437	1	0	1	0	0	0	copy fasta	PRAMEF27	chr1	13044476	13061575
PRAMEF27_chr1_13044476_13061575	0/0	c0009	1437	1	0	0	0	0	1	copy fasta	PRAMEF27	chr1	13044476	13061575
PRAMEF27_chr1_13044476_13061575	0/0	c0010	1437	1	0	1	0	0	0	copy fasta	PRAMEF27	chr1	13044476	13061575
PRAMEF27_chr1_13044476_13061575	0/0	c0011	1437	1	0	0	1	0	0	copy fasta	PRAMEF27	chr1	13044476	13061575
PRAMEF2_chr1_12852086_12866909	1/1	c0001	1425	230	48	39	110	7	24	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	c0002	1425	25	0	0	22	1	2	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	c0003	1425	23	6	7	7	1	2	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	c0004	1425	14	1	4	4	1	4	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	c0005	1425	6	6	0	0	0	0	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	c0006	1425	6	6	0	0	0	0	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	c0007	1425	5	5	0	0	0	0	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	c0008	1425	4	0	1	0	2	1	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	c0009	1425	4	0	4	0	0	0	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	c0010	1425	3	0	3	0	0	0	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	c0011	1425	3	3	0	0	0	0	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	c0012	1425	2	1	1	0	0	0	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	c0013	1425	2	0	0	2	0	0	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	c0014	1425	1	0	1	0	0	0	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	c0015	1425	1	0	0	0	0	1	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	c0016	1425	1	0	1	0	0	0	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	c0017	1425	1	1	0	0	0	0	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	c0018	1425	1	0	1	0	0	0	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	c0019	1425	1	0	1	0	0	0	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	c0020	1425	1	1	0	0	0	0	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	c0021	1425	1	1	0	0	0	0	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	c0022	1425	1	0	0	1	0	0	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	c0023	1425	1	0	1	0	0	0	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF2_chr1_12852086_12866909	0/0	c0024	1425	1	1	0	0	0	0	copy fasta	PRAMEF2	chr1	12852086	12866909
PRAMEF33_chr1_13298539_13313907	0/0	c0001	1425	119	2	28	75	5	9	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/1	c0002	1425	43	5	11	21	1	4	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	c0003	1425	29	0	0	19	1	9	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	c0004	1425	29	1	13	5	4	6	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	c0005	1425	20	2	3	7	0	8	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	c0006	1425	15	0	3	12	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	c0007	1425	12	0	0	12	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	c0008	1425	11	0	0	11	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	c0009	1425	9	7	2	0	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	c0010	1425	8	1	2	5	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907