JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ARRDC2_chr19_18003170_18019102	0/0	c0009	1224	2	0	0	2	0	0	copy fasta	ARRDC2	chr19	18003170	18019102
ARRDC2_chr19_18003170_18019102	0/0	c0010	1224	2	2	0	0	0	0	copy fasta	ARRDC2	chr19	18003170	18019102
ARRDC2_chr19_18003170_18019102	0/0	c0011	1224	2	2	0	0	0	0	copy fasta	ARRDC2	chr19	18003170	18019102
ARRDC2_chr19_18003170_18019102	0/0	c0012	1224	1	0	0	1	0	0	copy fasta	ARRDC2	chr19	18003170	18019102
ARRDC2_chr19_18003170_18019102	0/0	c0013	1224	1	1	0	0	0	0	copy fasta	ARRDC2	chr19	18003170	18019102
ARRDC2_chr19_18003170_18019102	0/0	c0014	1224	1	0	0	0	1	0	copy fasta	ARRDC2	chr19	18003170	18019102
ARRDC2_chr19_18003170_18019102	0/0	c0015	1224	1	0	0	1	0	0	copy fasta	ARRDC2	chr19	18003170	18019102
ARRDC2_chr19_18003170_18019102	0/0	c0016	1224	1	0	0	1	0	0	copy fasta	ARRDC2	chr19	18003170	18019102
ARRDC2_chr19_18003170_18019102	0/0	c0017	1224	1	0	1	0	0	0	copy fasta	ARRDC2	chr19	18003170	18019102
ARRDC2_chr19_18003170_18019102	0/0	c0018	1224	1	0	0	1	0	0	copy fasta	ARRDC2	chr19	18003170	18019102
ARRDC2_chr19_18003170_18019102	0/0	c0019	1224	1	0	1	0	0	0	copy fasta	ARRDC2	chr19	18003170	18019102
ARRDC3_chr5_91363631_91388317	1/1	c0001	1245	388	77	66	185	16	42	copy fasta	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	c0002	1245	8	8	0	0	0	0	copy fasta	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	c0003	1245	4	0	0	4	0	0	copy fasta	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	c0004	1245	1	1	0	0	0	0	copy fasta	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	c0005	1245	1	0	0	1	0	0	copy fasta	ARRDC3	chr5	91363631	91388317
ARRDC4_chr15_97955703_97978833	0/0	c0001	1257	127	1	17	87	3	19	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	c0002	1257	110	30	14	59	2	5	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	1/0	c0003	1257	77	28	18	18	7	5	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/1	c0004	1257	29	1	12	13	1	1	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	c0005	1257	14	1	5	1	1	6	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	c0006	1257	11	10	1	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	c0007	1257	10	0	0	10	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	c0008	1257	9	8	1	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	c0009	1257	4	4	0	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	c0010	1257	4	4	0	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	c0011	1257	3	2	1	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	c0012	1257	3	2	1	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	c0013	1257	2	0	0	2	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	c0014	1257	2	0	0	2	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	c0015	1257	2	0	2	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	c0016	1257	1	0	0	1	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	c0017	1257	1	0	0	0	0	1	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	c0018	1257	1	1	0	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	c0019	1257	1	0	0	1	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	c0020	1257	1	0	0	0	1	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	c0021	1257	1	1	0	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	c0022	1257	1	0	0	0	0	1	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	c0023	1257	1	0	0	1	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	c0024	1257	1	1	0	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	c0025	1257	1	1	0	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	c0026	1257	1	0	1	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	c0027	1257	1	0	1	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	c0028	1257	1	0	0	1	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	c0029	1257	1	0	0	0	1	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	c0030	1257	1	1	0	0	0	0	copy fasta	ARRDC4	chr15	97955703	97978833
ARRDC5_chr19_4885437_4907896	1/1	c0001	987	355	72	66	171	11	33	copy fasta	ARRDC5	chr19	4885437	4907896
ARRDC5_chr19_4885437_4907896	0/0	c0002	987	35	5	16	0	5	9	copy fasta	ARRDC5	chr19	4885437	4907896
ARRDC5_chr19_4885437_4907896	0/0	c0003	987	6	6	0	0	0	0	copy fasta	ARRDC5	chr19	4885437	4907896
ARRDC5_chr19_4885437_4907896	0/0	c0004	987	5	5	0	0	0	0	copy fasta	ARRDC5	chr19	4885437	4907896