JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRAMEF33_chr1_13298539_13313907	0/0	c0061	1425	1	1	0	0	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	c0062	1425	1	0	0	1	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	c0063	1425	1	1	0	0	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	c0064	1425	1	0	0	1	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	c0065	1425	1	1	0	0	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	c0066	1425	1	1	0	0	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	c0067	1704	1	0	0	0	0	1	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	c0068	1425	1	0	0	1	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	c0069	1425	1	1	0	0	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	c0070	1425	1	1	0	0	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	c0071	1425	1	1	0	0	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	c0072	1425	1	0	0	0	0	1	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	c0073	1425	1	0	0	0	0	1	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	c0074	1425	1	0	0	1	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	c0075	1425	1	0	0	0	0	1	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	c0076	1425	1	0	0	0	1	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	c0077	1425	1	1	0	0	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	c0078	1425	1	1	0	0	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	c0079	1425	1	0	1	0	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	c0080	1425	1	0	1	0	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	c0081	1425	1	1	0	0	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	c0082	1425	1	0	0	1	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	c0083	1425	1	0	1	0	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF33_chr1_13298539_13313907	0/0	c0084	1425	1	0	0	1	0	0	copy fasta	PRAMEF33	chr1	13298539	13313907
PRAMEF4_chr1_12874212_12891201	0/0	c0000	0	1	0	0	1	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/1	c0001	1437	158	30	27	78	6	16	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	1/0	c0002	1437	52	2	17	23	3	6	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	c0003	1437	17	2	2	7	2	4	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	c0004	1759	16	2	6	6	1	1	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	c0005	1438	14	1	3	6	1	3	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	c0006	1437	7	0	0	6	1	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	c0007	875	5	5	0	0	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	c0008	1437	5	5	0	0	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	c0009	1437	4	0	0	4	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	c0010	1437	3	3	0	0	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	c0011	1760	3	0	0	2	0	1	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	c0012	1438	3	0	2	0	0	1	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	c0013	1437	3	3	0	0	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	c0014	1437	3	3	0	0	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	c0015	1760	2	2	0	0	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	c0016	1437	2	2	0	0	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	c0017	1437	2	0	0	0	2	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	c0018	1437	2	0	1	1	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	c0019	1437	2	0	0	2	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	c0020	1437	2	0	0	2	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	c0021	1437	1	0	0	1	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	c0022	1437	1	0	0	0	0	1	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	c0023	1437	1	1	0	0	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	c0024	1437	1	1	0	0	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	c0025	1760	1	1	0	0	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201