JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRAMEF4_chr1_12874212_12891201	0/0	c0026	1758	1	0	0	1	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	c0027	1759	1	0	1	0	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	c0028	1437	1	0	0	1	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	c0029	1437	1	1	0	0	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	c0030	1437	1	1	0	0	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	c0031	1437	1	1	0	0	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	c0032	1437	1	0	0	1	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	c0033	1437	1	0	0	0	0	1	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	c0034	1437	1	1	0	0	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	c0035	1437	1	0	1	0	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	c0036	1437	1	0	0	1	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	c0037	1437	1	0	0	1	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	c0038	1437	1	1	0	0	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF5_chr1_13249198_13268435	0/0	c0001	1431	36	5	7	18	2	4	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	c0002	1431	32	2	11	15	1	3	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	c0003	1431	17	0	2	13	0	2	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	c0004	1431	9	1	2	4	1	1	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	c0005	1431	9	1	0	8	0	0	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	c0006	1431	6	0	2	4	0	0	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	c0007	1431	4	0	0	4	0	0	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	c0008	1431	4	0	0	4	0	0	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	c0009	1431	4	0	0	3	0	1	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	c0010	1431	3	1	0	2	0	0	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	c0011	1431	3	0	0	0	1	2	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	c0012	1431	2	0	0	2	0	0	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	c0013	1431	1	0	0	1	0	0	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	c0014	1431	1	0	1	0	0	0	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	c0015	1431	1	1	0	0	0	0	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	c0016	1431	1	1	0	0	0	0	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	c0017	1431	1	0	0	0	0	1	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	c0018	1431	1	0	0	1	0	0	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	c0019	1431	1	0	0	0	1	0	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	c0020	1431	1	0	0	1	0	0	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	c0021	1431	1	0	0	1	0	0	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	c0022	1431	1	1	0	0	0	0	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	c0023	1431	1	0	1	0	0	0	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	c0024	1431	1	0	0	1	0	0	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	c0025	1431	1	1	0	0	0	0	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF6_chr1_12933472_12952580	0/0	c0001	1431	31	3	7	17	1	3	copy fasta	PRAMEF6	chr1	12933472	12952580
PRAMEF6_chr1_12933472_12952580	0/0	c0002	1431	28	2	8	17	0	1	copy fasta	PRAMEF6	chr1	12933472	12952580
PRAMEF6_chr1_12933472_12952580	0/0	c0003	1431	5	0	2	1	1	1	copy fasta	PRAMEF6	chr1	12933472	12952580
PRAMEF6_chr1_12933472_12952580	0/0	c0004	1431	4	0	0	4	0	0	copy fasta	PRAMEF6	chr1	12933472	12952580
PRAMEF6_chr1_12933472_12952580	0/0	c0005	1431	4	0	2	2	0	0	copy fasta	PRAMEF6	chr1	12933472	12952580
PRAMEF6_chr1_12933472_12952580	0/0	c0006	1431	3	3	0	0	0	0	copy fasta	PRAMEF6	chr1	12933472	12952580
PRAMEF6_chr1_12933472_12952580	0/0	c0007	1431	3	1	2	0	0	0	copy fasta	PRAMEF6	chr1	12933472	12952580
PRAMEF6_chr1_12933472_12952580	0/0	c0008	1431	2	0	1	1	0	0	copy fasta	PRAMEF6	chr1	12933472	12952580
PRAMEF6_chr1_12933472_12952580	0/0	c0009	1431	1	0	0	1	0	0	copy fasta	PRAMEF6	chr1	12933472	12952580
PRAMEF6_chr1_12933472_12952580	0/0	c0010	1431	1	0	0	1	0	0	copy fasta	PRAMEF6	chr1	12933472	12952580
PRAMEF6_chr1_12933472_12952580	0/0	c0011	1431	1	0	0	1	0	0	copy fasta	PRAMEF6	chr1	12933472	12952580
PRAMEF6_chr1_12933472_12952580	0/0	c0012	1431	1	1	0	0	0	0	copy fasta	PRAMEF6	chr1	12933472	12952580