JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRAMEF6_chr1_12933472_12952580	0/0	c0013	1431	1	0	0	1	0	0	copy fasta	PRAMEF6	chr1	12933472	12952580
PRAMEF6_chr1_12933472_12952580	0/0	c0014	1431	1	0	1	0	0	0	copy fasta	PRAMEF6	chr1	12933472	12952580
PRAMEF6_chr1_12933472_12952580	0/0	c0015	1431	1	0	0	0	0	1	copy fasta	PRAMEF6	chr1	12933472	12952580
PRAMEF6_chr1_12933472_12952580	0/0	c0016	1431	1	0	1	0	0	0	copy fasta	PRAMEF6	chr1	12933472	12952580
PRAMEF6_chr1_12933472_12952580	0/0	c0017	1431	1	0	0	1	0	0	copy fasta	PRAMEF6	chr1	12933472	12952580
PRAMEF6_chr1_12933472_12952580	0/0	c0018	1431	1	0	0	1	0	0	copy fasta	PRAMEF6	chr1	12933472	12952580
PRAMEF7_chr1_12911610_12925751	0/0	c0001	1425	107	19	17	49	6	16	copy fasta	PRAMEF7	chr1	12911610	12925751
PRAMEF7_chr1_12911610_12925751	0/0	c0002	1425	74	6	30	27	4	7	copy fasta	PRAMEF7	chr1	12911610	12925751
PRAMEF7_chr1_12911610_12925751	0/0	c0003	1425	15	0	0	11	0	4	copy fasta	PRAMEF7	chr1	12911610	12925751
PRAMEF7_chr1_12911610_12925751	0/0	c0004	1425	12	1	4	1	0	6	copy fasta	PRAMEF7	chr1	12911610	12925751
PRAMEF7_chr1_12911610_12925751	0/0	c0005	1425	9	8	1	0	0	0	copy fasta	PRAMEF7	chr1	12911610	12925751
PRAMEF7_chr1_12911610_12925751	0/0	c0006	1425	8	0	4	4	0	0	copy fasta	PRAMEF7	chr1	12911610	12925751
PRAMEF7_chr1_12911610_12925751	0/0	c0007	1425	6	6	0	0	0	0	copy fasta	PRAMEF7	chr1	12911610	12925751
PRAMEF7_chr1_12911610_12925751	0/0	c0008	1425	4	4	0	0	0	0	copy fasta	PRAMEF7	chr1	12911610	12925751
PRAMEF7_chr1_12911610_12925751	0/0	c0009	1425	3	3	0	0	0	0	copy fasta	PRAMEF7	chr1	12911610	12925751
PRAMEF7_chr1_12911610_12925751	0/0	c0010	1425	3	0	0	0	0	3	copy fasta	PRAMEF7	chr1	12911610	12925751
PRAMEF7_chr1_12911610_12925751	0/0	c0011	1425	2	0	2	0	0	0	copy fasta	PRAMEF7	chr1	12911610	12925751
PRAMEF7_chr1_12911610_12925751	0/0	c0012	1425	2	0	2	0	0	0	copy fasta	PRAMEF7	chr1	12911610	12925751
PRAMEF7_chr1_12911610_12925751	0/0	c0013	1425	1	0	1	0	0	0	copy fasta	PRAMEF7	chr1	12911610	12925751
PRAMEF7_chr1_12911610_12925751	0/0	c0014	1425	1	0	0	1	0	0	copy fasta	PRAMEF7	chr1	12911610	12925751
PRAMEF7_chr1_12911610_12925751	0/0	c0015	1425	1	0	0	1	0	0	copy fasta	PRAMEF7	chr1	12911610	12925751
PRAMEF7_chr1_12911610_12925751	0/0	c0016	1425	1	0	1	0	0	0	copy fasta	PRAMEF7	chr1	12911610	12925751
PRAMEF7_chr1_12911610_12925751	0/0	c0017	1425	1	0	1	0	0	0	copy fasta	PRAMEF7	chr1	12911610	12925751
PRAMEF7_chr1_12911610_12925751	0/0	c0018	1425	1	1	0	0	0	0	copy fasta	PRAMEF7	chr1	12911610	12925751
PRAMEF7_chr1_12911610_12925751	0/0	c0019	1425	1	0	1	0	0	0	copy fasta	PRAMEF7	chr1	12911610	12925751
PRAMEF7_chr1_12911610_12925751	0/0	c0020	1425	1	0	0	1	0	0	copy fasta	PRAMEF7	chr1	12911610	12925751
PRAMEF7_chr1_12911610_12925751	0/0	c0021	1425	1	0	0	1	0	0	copy fasta	PRAMEF7	chr1	12911610	12925751
PRAMEF8_chr1_13276304_13290137	0/0	c0001	1425	93	6	10	54	2	21	copy fasta	PRAMEF8	chr1	13276304	13290137
PRAMEF8_chr1_13276304_13290137	0/0	c0002	1425	92	1	26	51	9	5	copy fasta	PRAMEF8	chr1	13276304	13290137
PRAMEF8_chr1_13276304_13290137	0/0	c0003	1425	78	16	16	40	1	5	copy fasta	PRAMEF8	chr1	13276304	13290137
PRAMEF8_chr1_13276304_13290137	0/0	c0004	1425	13	13	0	0	0	0	copy fasta	PRAMEF8	chr1	13276304	13290137
PRAMEF8_chr1_13276304_13290137	0/0	c0005	1425	9	3	1	4	0	1	copy fasta	PRAMEF8	chr1	13276304	13290137
PRAMEF8_chr1_13276304_13290137	0/0	c0006	1425	9	8	0	1	0	0	copy fasta	PRAMEF8	chr1	13276304	13290137
PRAMEF8_chr1_13276304_13290137	0/0	c0007	1425	7	6	1	0	0	0	copy fasta	PRAMEF8	chr1	13276304	13290137
PRAMEF8_chr1_13276304_13290137	0/0	c0008	1425	6	6	0	0	0	0	copy fasta	PRAMEF8	chr1	13276304	13290137
PRAMEF8_chr1_13276304_13290137	0/0	c0009	1425	4	2	1	1	0	0	copy fasta	PRAMEF8	chr1	13276304	13290137
PRAMEF8_chr1_13276304_13290137	0/0	c0010	1425	2	2	0	0	0	0	copy fasta	PRAMEF8	chr1	13276304	13290137
PRAMEF8_chr1_13276304_13290137	0/0	c0011	1425	2	2	0	0	0	0	copy fasta	PRAMEF8	chr1	13276304	13290137
PRAMEF8_chr1_13276304_13290137	0/0	c0012	1425	1	1	0	0	0	0	copy fasta	PRAMEF8	chr1	13276304	13290137
PRAMEF8_chr1_13276304_13290137	0/0	c0013	1393	1	0	0	1	0	0	copy fasta	PRAMEF8	chr1	13276304	13290137
PRAMEF8_chr1_13276304_13290137	0/0	c0014	1425	1	0	0	0	0	1	copy fasta	PRAMEF8	chr1	13276304	13290137
PRAMEF8_chr1_13276304_13290137	0/0	c0015	1425	1	1	0	0	0	0	copy fasta	PRAMEF8	chr1	13276304	13290137
PRAMEF8_chr1_13276304_13290137	0/0	c0016	1425	1	1	0	0	0	0	copy fasta	PRAMEF8	chr1	13276304	13290137
PRAMEF8_chr1_13276304_13290137	0/0	c0017	1425	1	0	0	1	0	0	copy fasta	PRAMEF8	chr1	13276304	13290137
PRAMEF8_chr1_13276304_13290137	0/0	c0018	1425	1	1	0	0	0	0	copy fasta	PRAMEF8	chr1	13276304	13290137
PRAMEF8_chr1_13276304_13290137	0/0	c0019	1425	1	0	0	1	0	0	copy fasta	PRAMEF8	chr1	13276304	13290137
PRAMEF8_chr1_13276304_13290137	0/0	c0020	1425	1	0	0	0	0	1	copy fasta	PRAMEF8	chr1	13276304	13290137
PRAMEF8_chr1_13276304_13290137	0/0	c0021	1425	1	0	1	0	0	0	copy fasta	PRAMEF8	chr1	13276304	13290137
PRAMEF8_chr1_13276304_13290137	0/0	c0022	1425	1	0	1	0	0	0	copy fasta	PRAMEF8	chr1	13276304	13290137
PRAMEF8_chr1_13276304_13290137	0/0	c0023	1425	1	0	0	1	0	0	copy fasta	PRAMEF8	chr1	13276304	13290137