JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRAMEF8_chr1_13276304_13290137	0/0	c0024	1425	1	0	1	0	0	0	copy fasta	PRAMEF8	chr1	13276304	13290137
PRAMEF8_chr1_13276304_13290137	0/0	c0025	1425	1	1	0	0	0	0	copy fasta	PRAMEF8	chr1	13276304	13290137
PRAMEF8_chr1_13276304_13290137	0/0	c0026	1425	1	0	1	0	0	0	copy fasta	PRAMEF8	chr1	13276304	13290137
PRAMEF8_chr1_13276304_13290137	0/0	c0027	1425	1	0	0	1	0	0	copy fasta	PRAMEF8	chr1	13276304	13290137
PRAMEF8_chr1_13276304_13290137	0/0	c0028	1425	1	0	1	0	0	0	copy fasta	PRAMEF8	chr1	13276304	13290137
PRAMEF9_chr1_13166848_13184459	0/0	c0001	1437	81	3	29	36	4	9	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	c0002	1437	33	1	6	24	0	2	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	1/0	c0003	1437	20	0	3	15	0	1	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/1	c0004	1437	19	2	2	11	1	2	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	c0005	1437	8	2	1	2	1	2	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	c0006	1437	6	1	1	4	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	c0007	1437	2	2	0	0	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	c0008	1437	2	0	0	2	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	c0009	1437	2	2	0	0	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	c0010	1437	2	2	0	0	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	c0011	1437	2	0	2	0	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	c0012	1437	2	2	0	0	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	c0013	1437	2	2	0	0	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	c0014	1437	2	1	1	0	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	c0015	1437	2	0	2	0	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	c0016	1437	1	0	0	1	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	c0017	1437	1	0	1	0	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	c0018	1437	1	0	1	0	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	c0019	1437	1	1	0	0	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	c0020	1437	1	1	0	0	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	c0021	1437	1	1	0	0	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	c0022	1759	1	1	0	0	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	c0023	1437	1	0	0	1	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	c0024	1437	1	0	0	1	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	c0025	1437	1	0	0	0	0	1	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	c0026	1437	1	0	0	0	0	1	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	c0027	1437	1	0	0	0	0	1	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	c0028	1437	1	0	0	0	0	1	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	c0029	1437	1	1	0	0	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	c0030	1437	1	0	0	1	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	c0031	1437	1	0	0	1	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	c0032	1437	1	1	0	0	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	c0033	1437	1	0	0	1	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	c0034	1437	1	0	1	0	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAME_chr22_22542701_22564265	0/1	c0001	1530	237	41	33	120	12	30	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	c0002	1530	84	20	12	40	1	11	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	c0003	1530	16	1	11	0	2	2	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	c0004	1530	12	1	3	8	0	0	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	c0005	1530	6	0	0	1	0	5	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	c0006	1530	6	5	1	0	0	0	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	c0007	1530	6	3	2	0	1	0	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	c0008	1530	3	3	0	0	0	0	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	c0009	1530	3	0	0	3	0	0	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	c0010	1530	2	1	0	0	0	1	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	c0011	1530	2	0	0	2	0	0	copy fasta	PRAME	chr22	22542701	22564265