JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRAME_chr22_22542701_22564265	0/0	c0012	1530	2	2	0	0	0	0	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	c0013	1530	2	2	0	0	0	0	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	c0014	1530	2	0	0	2	0	0	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	c0015	1530	2	2	0	0	0	0	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	c0016	1530	2	2	0	0	0	0	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	c0017	1530	1	0	0	1	0	0	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	c0018	1530	1	1	0	0	0	0	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	c0019	1530	1	0	0	1	0	0	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	c0020	1530	1	0	1	0	0	0	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	c0021	1530	1	1	0	0	0	0	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	c0022	1530	1	0	1	0	0	0	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	c0023	1530	1	0	0	0	0	1	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	c0024	1530	1	0	0	1	0	0	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	c0025	1530	1	0	0	1	0	0	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	c0026	1530	1	1	0	0	0	0	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	c0027	1530	1	0	0	1	0	0	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	c0028	1530	1	0	0	1	0	0	copy fasta	PRAME	chr22	22542701	22564265
PRAP1_chr10_133342373_133357683	0/1	c0001	456	363	78	68	166	14	36	copy fasta	PRAP1	chr10	133342373	133357683
PRAP1_chr10_133342373_133357683	0/0	c0002	456	16	10	4	0	2	0	copy fasta	PRAP1	chr10	133342373	133357683
PRAP1_chr10_133342373_133357683	1/0	c0003	456	3	2	0	0	0	0	copy fasta	PRAP1	chr10	133342373	133357683
PRAP1_chr10_133342373_133357683	0/0	c0004	456	3	3	0	0	0	0	copy fasta	PRAP1	chr10	133342373	133357683
PRAP1_chr10_133342373_133357683	0/0	c0005	456	1	1	0	0	0	0	copy fasta	PRAP1	chr10	133342373	133357683
PRAP1_chr10_133342373_133357683	0/0	c0006	456	1	1	0	0	0	0	copy fasta	PRAP1	chr10	133342373	133357683
PRAP1_chr10_133342373_133357683	0/0	c0007	456	1	1	0	0	0	0	copy fasta	PRAP1	chr10	133342373	133357683
PRB2_chr12_11386540_11400567	0/1	c0001	1251	123	4	32	68	6	12	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	1/0	c0002	1251	107	14	16	70	2	4	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	c0003	1251	73	3	13	39	0	18	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	c0004	1806	34	21	1	8	1	3	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	c0005	1434	12	0	0	12	0	0	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	c0006	2175	11	2	1	7	0	1	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	c0007	1251	5	4	0	0	0	1	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	c0008	1251	4	4	0	0	0	0	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	c0009	813	4	0	0	4	0	0	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	c0010	1179	4	0	0	2	0	2	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	c0011	1065	3	3	0	0	0	0	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	c0012	996	2	0	2	0	0	0	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	c0013	1251	2	0	0	0	0	2	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	c0014	1806	2	0	1	0	0	1	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	c0015	1065	2	0	0	2	0	0	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	c0016	2115	1	0	1	0	0	0	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	c0017	1806	1	1	0	0	0	0	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	c0018	1251	1	0	1	0	0	0	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	c0019	1803	1	1	0	0	0	0	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	c0020	1620	1	1	0	0	0	0	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	c0021	813	1	1	0	0	0	0	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	c0022	1251	1	0	1	0	0	0	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	c0023	1251	1	0	0	0	1	0	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	c0024	1251	1	0	0	1	0	0	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	c0025	1251	1	0	0	0	0	1	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	c0026	1251	1	0	1	0	0	0	copy fasta	PRB2	chr12	11386540	11400567