JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRB2_chr12_11386540_11400567	0/0	c0027	1251	1	0	1	0	0	0	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	c0028	1434	1	0	0	1	0	0	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	c0029	1251	1	1	0	0	0	0	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	c0030	1251	1	1	0	0	0	0	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	c0031	1251	1	1	0	0	0	0	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	c0032	1251	1	1	0	0	0	0	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	c0033	1251	1	0	0	1	0	0	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	c0034	1251	1	0	1	0	0	0	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	c0035	1251	1	0	0	0	0	1	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	c0036	1251	1	1	0	0	0	0	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	c0037	1284	1	0	0	1	0	0	copy fasta	PRB2	chr12	11386540	11400567
PRB3_chr12_11260914_11274707	0/0	c0001	930	194	27	36	97	8	26	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	c0002	741	58	17	10	21	1	9	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	c0003	994	43	0	0	42	0	1	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	c0004	931	25	0	1	16	1	7	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	c0005	994	12	9	3	0	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	c0006	1057	11	11	0	0	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	c0007	741	11	9	2	0	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	c0008	804	10	0	8	0	2	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	c0009	867	8	0	2	5	1	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	c0010	930	5	1	0	4	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	c0011	1056	5	4	1	0	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	c0012	868	4	0	0	4	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	c0013	930	4	4	0	0	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	c0014	881	3	3	0	0	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/1	c0015	930	3	0	1	0	1	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	c0016	930	3	0	3	0	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	c0017	1056	3	0	0	3	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	c0018	741	3	0	0	3	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	c0019	678	2	0	2	0	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	c0020	1430	2	0	0	2	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	c0021	868	2	2	0	0	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	c0022	867	2	0	1	0	0	1	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	c0023	1182	2	0	0	2	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	c0024	931	2	0	0	2	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	c0025	867	2	0	0	2	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	c0026	930	2	0	0	2	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	c0027	867	2	2	0	0	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	c0028	930	1	0	1	0	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	c0029	1182	1	1	0	0	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	c0030	1056	1	0	1	0	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	c0031	930	1	1	0	0	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	c0032	930	1	0	0	1	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	c0033	994	1	0	0	1	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	c0034	931	1	0	0	0	0	1	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	c0035	994	1	0	0	1	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	c0036	1056	1	0	0	1	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	c0037	1057	1	0	0	1	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	c0038	929	1	0	0	1	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	c0039	930	1	1	0	0	0	0	copy fasta	PRB3	chr12	11260914	11274707