JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRB3_chr12_11260914_11274707	0/0	c0040	993	1	0	1	0	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	c0041	741	1	0	0	0	0	1	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	c0042	1119	1	0	0	0	0	1	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	c0043	993	1	0	0	0	0	1	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	c0044	930	1	0	1	0	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	c0045	931	1	1	0	0	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	c0046	805	1	1	0	0	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	c0047	930	1	0	0	1	0	0	copy fasta	PRB3	chr12	11260914	11274707
PRB4_chr12_11302077_11315436	0/1	c0001	807	257	40	47	136	10	23	copy fasta	PRB4	chr12	11302077	11315436
PRB4_chr12_11302077_11315436	0/0	c0002	744	91	18	11	45	2	15	copy fasta	PRB4	chr12	11302077	11315436
PRB4_chr12_11302077_11315436	0/0	c0003	933	45	9	2	24	2	8	copy fasta	PRB4	chr12	11302077	11315436
PRB4_chr12_11302077_11315436	0/0	c0004	870	18	15	3	0	0	0	copy fasta	PRB4	chr12	11302077	11315436
PRB4_chr12_11302077_11315436	0/0	c0005	807	16	0	13	0	1	2	copy fasta	PRB4	chr12	11302077	11315436
PRB4_chr12_11302077_11315436	0/0	c0006	807	5	3	2	0	0	0	copy fasta	PRB4	chr12	11302077	11315436
PRB4_chr12_11302077_11315436	0/0	c0007	870	4	4	0	0	0	0	copy fasta	PRB4	chr12	11302077	11315436
PRB4_chr12_11302077_11315436	0/0	c0008	807	4	0	0	4	0	0	copy fasta	PRB4	chr12	11302077	11315436
PRB4_chr12_11302077_11315436	0/0	c0009	807	3	0	0	3	0	0	copy fasta	PRB4	chr12	11302077	11315436
PRB4_chr12_11302077_11315436	0/0	c0010	744	2	0	0	0	0	2	copy fasta	PRB4	chr12	11302077	11315436
PRB4_chr12_11302077_11315436	0/0	c0011	744	1	0	1	0	0	0	copy fasta	PRB4	chr12	11302077	11315436
PRB4_chr12_11302077_11315436	0/0	c0012	807	1	1	0	0	0	0	copy fasta	PRB4	chr12	11302077	11315436
PRB4_chr12_11302077_11315436	0/0	c0013	807	1	0	0	1	0	0	copy fasta	PRB4	chr12	11302077	11315436
PRB4_chr12_11302077_11315436	0/0	c0014	807	1	0	0	0	1	0	copy fasta	PRB4	chr12	11302077	11315436
PRB4_chr12_11302077_11315436	0/0	c0015	807	1	0	1	0	0	0	copy fasta	PRB4	chr12	11302077	11315436
PRB4_chr12_11302077_11315436	0/0	c0016	933	1	0	0	1	0	0	copy fasta	PRB4	chr12	11302077	11315436
PRC1_chr15_90961040_90999535	0/0	c0001	1863	178	71	25	75	0	7	copy fasta	PRC1	chr15	90961040	90999535
PRC1_chr15_90961040_90999535	0/1	c0002	1863	168	21	38	74	14	20	copy fasta	PRC1	chr15	90961040	90999535
PRC1_chr15_90961040_90999535	0/0	c0003	1863	10	0	3	0	2	5	copy fasta	PRC1	chr15	90961040	90999535
PRC1_chr15_90961040_90999535	0/0	c0004	1863	6	0	0	0	0	6	copy fasta	PRC1	chr15	90961040	90999535
PRC1_chr15_90961040_90999535	0/0	c0005	1863	3	0	0	3	0	0	copy fasta	PRC1	chr15	90961040	90999535
PRC1_chr15_90961040_90999535	0/0	c0006	1863	2	0	0	2	0	0	copy fasta	PRC1	chr15	90961040	90999535
PRC1_chr15_90961040_90999535	0/0	c0007	1863	2	0	0	0	0	2	copy fasta	PRC1	chr15	90961040	90999535
PRC1_chr15_90961040_90999535	0/0	c0008	1863	1	1	0	0	0	0	copy fasta	PRC1	chr15	90961040	90999535
PRC1_chr15_90961040_90999535	0/0	c0009	1863	1	1	0	0	0	0	copy fasta	PRC1	chr15	90961040	90999535
PRC1_chr15_90961040_90999535	0/0	c0010	1863	1	0	1	0	0	0	copy fasta	PRC1	chr15	90961040	90999535
PRC1_chr15_90961040_90999535	0/0	c0011	1863	1	0	1	0	0	0	copy fasta	PRC1	chr15	90961040	90999535
PRC1_chr15_90961040_90999535	0/0	c0012	1863	1	0	0	0	0	1	copy fasta	PRC1	chr15	90961040	90999535
PRC1_chr15_90961040_90999535	0/0	c0013	1863	1	0	0	0	0	1	copy fasta	PRC1	chr15	90961040	90999535
PRC1_chr15_90961040_90999535	1/0	c0014	1863	1	0	0	0	0	0	copy fasta	PRC1	chr15	90961040	90999535
PRCC_chr1_156762535_156805815	1/1	c0001	1476	292	91	54	101	7	37	copy fasta	PRCC	chr1	156762535	156805815
PRCC_chr1_156762535_156805815	0/0	c0002	1476	48	4	20	16	3	5	copy fasta	PRCC	chr1	156762535	156805815
PRCC_chr1_156762535_156805815	0/0	c0003	1476	3	0	2	0	0	1	copy fasta	PRCC	chr1	156762535	156805815
PRCC_chr1_156762535_156805815	0/0	c0004	1476	1	0	1	0	0	0	copy fasta	PRCC	chr1	156762535	156805815
PRCC_chr1_156762535_156805815	0/0	c0005	1476	1	0	0	1	0	0	copy fasta	PRCC	chr1	156762535	156805815
PRCC_chr1_156762535_156805815	0/0	c0006	1476	1	0	0	1	0	0	copy fasta	PRCC	chr1	156762535	156805815
PRCC_chr1_156762535_156805815	0/0	c0007	1476	1	1	0	0	0	0	copy fasta	PRCC	chr1	156762535	156805815
PRCC_chr1_156762535_156805815	0/0	c0008	1476	1	0	0	1	0	0	copy fasta	PRCC	chr1	156762535	156805815
PRCC_chr1_156762535_156805815	0/0	c0009	1476	1	0	0	0	0	1	copy fasta	PRCC	chr1	156762535	156805815
PRCC_chr1_156762535_156805815	0/0	c0010	1476	1	0	1	0	0	0	copy fasta	PRCC	chr1	156762535	156805815
PRCD_chr17_76535044_76550376	1/1	c0001	165	441	96	74	206	16	47	copy fasta	PRCD	chr17	76535044	76550376
PRCD_chr17_76535044_76550376	0/0	c0002	165	1	0	0	0	0	1	copy fasta	PRCD	chr17	76535044	76550376