JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRCP_chr11_82817936_82905430	1/1	c0001	1491	181	53	47	56	5	18	copy fasta	PRCP	chr11	82817936	82905430
PRCP_chr11_82817936_82905430	0/0	c0002	1491	59	0	3	48	0	8	copy fasta	PRCP	chr11	82817936	82905430
PRCP_chr11_82817936_82905430	0/0	c0003	1491	37	9	11	10	2	5	copy fasta	PRCP	chr11	82817936	82905430
PRCP_chr11_82817936_82905430	0/0	c0004	1491	31	23	2	0	1	5	copy fasta	PRCP	chr11	82817936	82905430
PRCP_chr11_82817936_82905430	0/0	c0005	1491	3	3	0	0	0	0	copy fasta	PRCP	chr11	82817936	82905430
PRCP_chr11_82817936_82905430	0/0	c0006	1491	2	0	0	0	0	2	copy fasta	PRCP	chr11	82817936	82905430
PRCP_chr11_82817936_82905430	0/0	c0007	1491	2	0	0	2	0	0	copy fasta	PRCP	chr11	82817936	82905430
PRCP_chr11_82817936_82905430	0/0	c0008	1491	1	0	0	1	0	0	copy fasta	PRCP	chr11	82817936	82905430
PRCP_chr11_82817936_82905430	0/0	c0009	1491	1	1	0	0	0	0	copy fasta	PRCP	chr11	82817936	82905430
PRCP_chr11_82817936_82905430	0/0	c0010	1491	1	0	1	0	0	0	copy fasta	PRCP	chr11	82817936	82905430
PRCP_chr11_82817936_82905430	0/0	c0011	1491	1	0	0	1	0	0	copy fasta	PRCP	chr11	82817936	82905430
PRCP_chr11_82817936_82905430	0/0	c0012	1491	1	1	0	0	0	0	copy fasta	PRCP	chr11	82817936	82905430
PRDM10_chr11_129894711_130007835	1/0	c0001	3471	52	1	16	27	1	6	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0002	3471	42	1	1	39	0	1	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0003	3471	36	4	7	20	1	4	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0004	3471	29	4	3	15	1	6	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0005	3471	16	5	4	6	0	1	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0006	3471	11	8	1	2	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0007	3471	10	0	0	10	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0008	3471	9	9	0	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0009	3471	9	0	4	5	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0010	3471	7	7	0	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0011	3471	7	6	1	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0012	3471	7	2	4	0	1	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0013	3471	7	5	2	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0014	3471	6	0	4	0	0	2	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0015	3471	4	0	0	4	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0016	3471	4	4	0	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0017	3471	4	4	0	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0018	3471	3	2	0	1	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0019	3471	3	3	0	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0020	3471	3	3	0	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0021	3471	2	2	0	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0022	3471	2	1	0	1	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0023	3471	2	2	0	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0024	3471	2	2	0	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0025	3471	2	0	0	1	0	1	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0026	3471	2	0	0	2	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0027	3471	2	1	0	1	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0028	3471	2	2	0	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0029	3471	2	0	0	2	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0030	3471	2	0	0	2	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0031	3471	2	1	1	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0032	3471	2	2	0	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0033	3471	1	0	0	1	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0034	3471	1	0	0	1	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0035	3471	1	0	0	1	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0036	3471	1	1	0	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0037	3471	1	0	0	1	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0038	3471	1	0	0	1	0	0	copy fasta	PRDM10	chr11	129894711	130007835