JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRDM10_chr11_129894711_130007835	0/0	c0039	3471	1	0	0	1	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/1	c0040	3471	1	0	0	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0041	3471	1	1	0	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0042	3471	1	1	0	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0043	3471	1	0	1	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0044	3471	1	1	0	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0045	3471	1	1	0	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0046	3471	1	1	0	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0047	3471	1	1	0	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0048	3471	1	0	1	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0049	3471	1	1	0	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0050	3471	1	0	0	1	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0051	3471	1	0	0	0	0	1	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0052	3471	1	0	1	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0053	3471	1	1	0	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0054	3471	1	0	0	1	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0055	3471	1	0	0	1	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0056	3471	1	1	0	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0057	3471	1	0	0	1	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0058	3471	1	0	1	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0059	3471	1	1	0	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0060	3471	1	1	0	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0061	3471	1	0	0	1	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0062	3471	1	1	0	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0063	3471	1	0	0	1	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0064	3471	1	1	0	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	c0065	3471	1	1	0	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM11_chr11_45141639_45240109	0/1	c0001	3534	161	30	27	77	6	20	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	1/0	c0002	3534	84	20	10	47	1	5	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	c0003	3534	36	22	10	0	1	3	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	c0004	3534	8	0	7	0	0	1	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	c0005	3534	3	0	0	3	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	c0006	3534	2	2	0	0	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	c0007	3534	2	2	0	0	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	c0008	3534	2	1	1	0	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	c0009	3534	2	2	0	0	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	c0010	3534	2	2	0	0	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	c0011	3534	1	0	0	1	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	c0012	3534	1	0	0	0	0	1	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	c0013	3534	1	0	1	0	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	c0014	3534	1	0	0	1	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	c0015	3534	1	1	0	0	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	c0016	3534	1	0	0	1	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM12_chr9_130659594_130687983	1/0	c0001	1104	111	42	20	21	10	17	copy fasta	PRDM12	chr9	130659594	130687983
PRDM12_chr9_130659594_130687983	0/0	c0002	1107	108	28	21	50	1	8	copy fasta	PRDM12	chr9	130659594	130687983
PRDM12_chr9_130659594_130687983	0/0	c0003	1107	72	13	21	26	2	10	copy fasta	PRDM12	chr9	130659594	130687983
PRDM12_chr9_130659594_130687983	0/0	c0004	1089	35	0	4	27	0	4	copy fasta	PRDM12	chr9	130659594	130687983
PRDM12_chr9_130659594_130687983	0/0	c0005	1107	21	4	0	15	0	2	copy fasta	PRDM12	chr9	130659594	130687983
PRDM12_chr9_130659594_130687983	0/1	c0006	1095	12	4	4	0	3	0	copy fasta	PRDM12	chr9	130659594	130687983
PRDM12_chr9_130659594_130687983	0/0	c0007	1104	8	0	5	0	1	2	copy fasta	PRDM12	chr9	130659594	130687983