JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ARRDC5_chr19_4885437_4907896	0/0	c0005	987	2	0	2	0	0	0	copy fasta	ARRDC5	chr19	4885437	4907896
ARRDC5_chr19_4885437_4907896	0/0	c0006	987	2	0	0	0	0	2	copy fasta	ARRDC5	chr19	4885437	4907896
ARRDC5_chr19_4885437_4907896	0/0	c0007	987	2	2	0	0	0	0	copy fasta	ARRDC5	chr19	4885437	4907896
ARRDC5_chr19_4885437_4907896	0/0	c0008	987	1	1	0	0	0	0	copy fasta	ARRDC5	chr19	4885437	4907896
ARRDC5_chr19_4885437_4907896	0/0	c0009	987	1	0	0	1	0	0	copy fasta	ARRDC5	chr19	4885437	4907896
ARRDC5_chr19_4885437_4907896	0/0	c0010	987	1	0	0	1	0	0	copy fasta	ARRDC5	chr19	4885437	4907896
ARRDC5_chr19_4885437_4907896	0/0	c0011	987	1	1	0	0	0	0	copy fasta	ARRDC5	chr19	4885437	4907896
ARRDC5_chr19_4885437_4907896	0/0	c0012	987	1	0	0	1	0	0	copy fasta	ARRDC5	chr19	4885437	4907896
ARSA_chr22_50617754_50633152	1/1	c0001	1530	200	42	25	104	6	21	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	c0002	1530	132	19	30	64	7	12	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	c0003	1530	86	17	20	39	2	8	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	c0004	1530	11	9	1	0	0	1	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	c0005	1530	6	6	0	0	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	c0006	1530	5	0	4	0	1	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	c0007	1530	5	5	0	0	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	c0008	1530	2	0	0	2	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	c0009	1530	1	1	0	0	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	c0010	1530	1	0	0	1	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	c0011	1530	1	0	0	0	0	1	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	c0012	1530	1	0	0	0	1	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	c0013	1530	1	0	0	1	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	c0014	1530	1	0	0	1	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	c0015	1530	1	0	0	1	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	c0016	1530	1	0	1	0	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	c0017	1530	1	1	0	0	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	c0018	1530	1	0	0	0	0	1	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	c0019	1530	1	0	0	0	1	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	c0020	1530	1	0	1	0	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	c0021	1530	1	0	0	1	0	0	copy fasta	ARSA	chr22	50617754	50633152
ARSB_chr5_78772209_78990310	1/0	c0001	1602	130	17	20	77	2	13	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/1	c0002	1602	96	5	18	60	5	7	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/0	c0003	1602	67	38	8	12	4	5	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/0	c0004	1602	28	4	12	2	2	8	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/0	c0005	1602	11	11	0	0	0	0	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/0	c0006	1602	6	0	3	0	1	2	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/0	c0007	1602	4	3	1	0	0	0	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/0	c0008	1602	2	2	0	0	0	0	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/0	c0009	1602	2	2	0	0	0	0	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/0	c0010	1602	2	0	0	0	2	0	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/0	c0011	1602	1	0	0	0	0	1	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/0	c0012	1602	1	0	1	0	0	0	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/0	c0013	1602	1	0	1	0	0	0	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/0	c0014	1602	1	0	0	0	0	1	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/0	c0015	1602	1	1	0	0	0	0	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/0	c0016	1602	1	1	0	0	0	0	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/0	c0017	1602	1	1	0	0	0	0	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/0	c0018	1602	1	1	0	0	0	0	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/0	c0019	1602	1	1	0	0	0	0	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/0	c0020	1602	1	0	0	1	0	0	copy fasta	ARSB	chr5	78772209	78990310
ARSB_chr5_78772209_78990310	0/0	c0021	1602	1	0	0	0	0	1	copy fasta	ARSB	chr5	78772209	78990310