JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRDM12_chr9_130659594_130687983	0/0	c0008	1110	8	0	2	4	0	2	copy fasta	PRDM12	chr9	130659594	130687983
PRDM12_chr9_130659594_130687983	0/0	c0009	1107	3	0	0	3	0	0	copy fasta	PRDM12	chr9	130659594	130687983
PRDM12_chr9_130659594_130687983	0/0	c0010	1089	3	0	0	3	0	0	copy fasta	PRDM12	chr9	130659594	130687983
PRDM12_chr9_130659594_130687983	0/0	c0011	1104	2	2	0	0	0	0	copy fasta	PRDM12	chr9	130659594	130687983
PRDM12_chr9_130659594_130687983	0/0	c0012	1110	2	2	0	0	0	0	copy fasta	PRDM12	chr9	130659594	130687983
PRDM12_chr9_130659594_130687983	0/0	c0013	1107	2	0	0	2	0	0	copy fasta	PRDM12	chr9	130659594	130687983
PRDM12_chr9_130659594_130687983	0/0	c0014	1086	1	0	0	0	1	0	copy fasta	PRDM12	chr9	130659594	130687983
PRDM12_chr9_130659594_130687983	0/0	c0015	1095	1	0	0	1	0	0	copy fasta	PRDM12	chr9	130659594	130687983
PRDM12_chr9_130659594_130687983	0/0	c0016	1086	1	0	0	0	0	1	copy fasta	PRDM12	chr9	130659594	130687983
PRDM12_chr9_130659594_130687983	0/0	c0017	1107	1	1	0	0	0	0	copy fasta	PRDM12	chr9	130659594	130687983
PRDM12_chr9_130659594_130687983	0/0	c0018	1107	1	0	1	0	0	0	copy fasta	PRDM12	chr9	130659594	130687983
PRDM13_chr6_99601833_99620562	1/0	c0001	2124	300	26	61	165	15	32	copy fasta	PRDM13	chr6	99601833	99620562
PRDM13_chr6_99601833_99620562	0/1	c0002	2127	96	36	15	30	3	11	copy fasta	PRDM13	chr6	99601833	99620562
PRDM13_chr6_99601833_99620562	0/0	c0003	2124	12	12	0	0	0	0	copy fasta	PRDM13	chr6	99601833	99620562
PRDM13_chr6_99601833_99620562	0/0	c0004	2124	6	6	0	0	0	0	copy fasta	PRDM13	chr6	99601833	99620562
PRDM13_chr6_99601833_99620562	0/0	c0005	2124	5	3	0	1	0	1	copy fasta	PRDM13	chr6	99601833	99620562
PRDM13_chr6_99601833_99620562	0/0	c0006	2124	2	0	0	2	0	0	copy fasta	PRDM13	chr6	99601833	99620562
PRDM13_chr6_99601833_99620562	0/0	c0007	2127	2	2	0	0	0	0	copy fasta	PRDM13	chr6	99601833	99620562
PRDM13_chr6_99601833_99620562	0/0	c0008	2124	2	0	0	2	0	0	copy fasta	PRDM13	chr6	99601833	99620562
PRDM13_chr6_99601833_99620562	0/0	c0009	2124	2	0	0	0	0	2	copy fasta	PRDM13	chr6	99601833	99620562
PRDM13_chr6_99601833_99620562	0/0	c0010	2124	2	0	0	2	0	0	copy fasta	PRDM13	chr6	99601833	99620562
PRDM13_chr6_99601833_99620562	0/0	c0011	2127	2	0	1	0	0	1	copy fasta	PRDM13	chr6	99601833	99620562
PRDM13_chr6_99601833_99620562	0/0	c0012	2124	1	0	0	1	0	0	copy fasta	PRDM13	chr6	99601833	99620562
PRDM13_chr6_99601833_99620562	0/0	c0013	2124	1	0	1	0	0	0	copy fasta	PRDM13	chr6	99601833	99620562
PRDM13_chr6_99601833_99620562	0/0	c0014	2127	1	1	0	0	0	0	copy fasta	PRDM13	chr6	99601833	99620562
PRDM13_chr6_99601833_99620562	0/0	c0015	2124	1	0	0	1	0	0	copy fasta	PRDM13	chr6	99601833	99620562
PRDM13_chr6_99601833_99620562	0/0	c0016	2124	1	1	0	0	0	0	copy fasta	PRDM13	chr6	99601833	99620562
PRDM13_chr6_99601833_99620562	0/0	c0017	2124	1	0	1	0	0	0	copy fasta	PRDM13	chr6	99601833	99620562
PRDM13_chr6_99601833_99620562	0/0	c0018	2124	1	0	1	0	0	0	copy fasta	PRDM13	chr6	99601833	99620562
PRDM13_chr6_99601833_99620562	0/0	c0019	2124	1	0	0	1	0	0	copy fasta	PRDM13	chr6	99601833	99620562
PRDM13_chr6_99601833_99620562	0/0	c0020	2124	1	0	0	0	0	1	copy fasta	PRDM13	chr6	99601833	99620562
PRDM13_chr6_99601833_99620562	0/0	c0021	2124	1	0	0	1	0	0	copy fasta	PRDM13	chr6	99601833	99620562
PRDM13_chr6_99601833_99620562	0/0	c0022	2127	1	1	0	0	0	0	copy fasta	PRDM13	chr6	99601833	99620562
PRDM14_chr8_70046651_70076252	0/0	c0001	1716	105	33	18	22	9	23	copy fasta	PRDM14	chr8	70046651	70076252
PRDM14_chr8_70046651_70076252	0/0	c0002	1716	102	17	3	78	0	4	copy fasta	PRDM14	chr8	70046651	70076252
PRDM14_chr8_70046651_70076252	1/1	c0003	1716	93	3	28	47	3	10	copy fasta	PRDM14	chr8	70046651	70076252
PRDM14_chr8_70046651_70076252	0/0	c0004	1716	74	12	13	43	1	5	copy fasta	PRDM14	chr8	70046651	70076252
PRDM14_chr8_70046651_70076252	0/0	c0005	1716	16	16	0	0	0	0	copy fasta	PRDM14	chr8	70046651	70076252
PRDM14_chr8_70046651_70076252	0/0	c0006	1716	13	7	1	0	0	5	copy fasta	PRDM14	chr8	70046651	70076252
PRDM14_chr8_70046651_70076252	0/0	c0007	1716	4	1	0	2	0	1	copy fasta	PRDM14	chr8	70046651	70076252
PRDM14_chr8_70046651_70076252	0/0	c0008	1716	4	4	0	0	0	0	copy fasta	PRDM14	chr8	70046651	70076252
PRDM14_chr8_70046651_70076252	0/0	c0009	1716	3	3	0	0	0	0	copy fasta	PRDM14	chr8	70046651	70076252
PRDM14_chr8_70046651_70076252	0/0	c0010	1716	3	0	1	2	0	0	copy fasta	PRDM14	chr8	70046651	70076252
PRDM14_chr8_70046651_70076252	0/0	c0011	1716	1	0	0	0	1	0	copy fasta	PRDM14	chr8	70046651	70076252
PRDM14_chr8_70046651_70076252	0/0	c0012	1716	1	0	0	0	0	1	copy fasta	PRDM14	chr8	70046651	70076252
PRDM14_chr8_70046651_70076252	0/0	c0013	1716	1	1	0	0	0	0	copy fasta	PRDM14	chr8	70046651	70076252
PRDM14_chr8_70046651_70076252	0/0	c0014	1716	1	1	0	0	0	0	copy fasta	PRDM14	chr8	70046651	70076252
PRDM14_chr8_70046651_70076252	0/0	c0015	1716	1	0	0	0	0	1	copy fasta	PRDM14	chr8	70046651	70076252
PRDM15_chr21_41793225_41884344	0/0	c0001	3426	73	17	10	36	4	6	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/1	c0002	3426	67	10	14	36	2	4	copy fasta	PRDM15	chr21	41793225	41884344