JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRDM15_chr21_41793225_41884344	0/0	c0003	3426	61	1	20	23	6	11	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0004	3426	29	0	1	22	0	6	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0005	3426	25	9	3	10	0	3	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0006	3426	20	11	1	3	0	5	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0007	3426	13	0	1	12	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0008	3426	10	0	2	6	0	2	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0009	3426	10	7	3	0	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0010	3426	8	7	1	0	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0011	3426	7	5	2	0	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0012	3426	5	0	2	0	2	1	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0013	3426	5	1	0	0	1	3	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0014	3426	5	2	1	1	1	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0015	3426	4	0	0	4	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0016	3426	4	4	0	0	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0017	3426	4	1	2	0	1	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0018	3426	4	2	2	0	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0019	3426	3	0	0	2	0	1	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0020	3426	3	1	0	2	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0021	3426	2	0	2	0	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0022	3426	2	0	0	0	0	2	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0023	3426	2	0	0	2	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0024	3426	2	0	0	0	0	2	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0025	3426	2	2	0	0	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0026	3426	2	2	0	0	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0027	3426	2	2	0	0	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0028	3426	2	0	0	2	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0029	3426	1	0	1	0	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0030	3426	1	0	1	0	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0031	3426	1	0	0	1	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0032	3426	1	0	0	1	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0033	3426	1	0	1	0	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0034	3426	1	0	0	0	0	1	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0035	3426	1	1	0	0	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0036	3426	1	0	0	1	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0037	3426	1	1	0	0	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0038	3426	1	0	0	0	1	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0039	3426	1	0	0	1	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0040	3426	1	1	0	0	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0041	3426	1	1	0	0	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0042	3426	1	1	0	0	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0043	3426	1	1	0	0	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0044	3426	1	1	0	0	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0045	3426	1	0	0	0	0	1	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0046	3426	1	0	0	1	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0047	3426	1	0	0	1	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0048	3426	1	1	0	0	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0049	3426	1	0	0	1	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0050	3426	1	0	0	1	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0051	3426	1	0	0	1	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	1/0	c0052	3426	1	0	0	0	0	0	copy fasta	PRDM15	chr21	41793225	41884344