JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRDM15_chr21_41793225_41884344	0/0	c0053	3426	1	1	0	0	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0054	3426	1	0	0	1	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0055	3426	1	1	0	0	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0056	3426	1	0	0	1	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0057	3426	1	1	0	0	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	c0058	3426	1	1	0	0	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM16_chr1_3064203_3443621	0/0	c0001	3831	74	33	9	23	2	7	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/1	c0002	3831	52	1	14	25	2	9	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	c0003	3831	19	8	7	0	1	3	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	c0004	3831	14	13	0	0	0	1	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	1/0	c0005	3831	6	0	4	0	1	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	c0006	3831	5	5	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	c0007	3831	4	4	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	c0008	3831	4	4	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	c0009	3831	3	0	0	3	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	c0010	3831	3	0	0	3	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	c0011	3831	3	0	3	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	c0012	3831	2	0	2	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	c0013	3831	2	2	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	c0014	3831	2	0	2	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	c0015	3831	1	1	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	c0016	3831	1	1	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	c0017	3831	1	0	1	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	c0018	3831	1	1	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	c0019	3831	1	1	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	c0020	3831	1	0	0	1	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	c0021	3831	1	1	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	c0022	3831	1	1	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	c0023	3831	1	1	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	c0024	3831	1	1	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	c0025	3831	1	1	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	c0026	3831	1	0	0	0	0	1	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	c0027	3831	1	0	0	0	0	1	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	c0028	3831	1	0	0	1	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	c0029	3831	1	0	1	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	c0030	3831	1	1	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	c0031	3831	1	0	1	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM1_chr6_106081336_106114938	1/0	c0001	2478	234	49	36	107	13	28	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	c0002	2478	61	1	9	48	1	2	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/1	c0003	2478	55	15	18	3	2	16	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	c0004	2478	32	7	2	21	0	2	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	c0005	2478	7	7	0	0	0	0	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	c0006	2478	3	3	0	0	0	0	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	c0007	2478	2	0	0	2	0	0	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	c0008	2478	2	0	2	0	0	0	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	c0009	2478	2	2	0	0	0	0	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	c0010	2478	1	0	0	0	0	1	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	c0011	2478	1	1	0	0	0	0	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	c0012	2478	1	1	0	0	0	0	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	c0013	2478	1	0	1	0	0	0	copy fasta	PRDM1	chr6	106081336	106114938