JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRDM1_chr6_106081336_106114938	0/0	c0014	2478	1	1	0	0	0	0	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	c0015	2478	1	0	1	0	0	0	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	c0016	2478	1	0	0	0	0	1	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	c0017	2478	1	0	0	1	0	0	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	c0018	2478	1	0	0	1	0	0	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	c0019	2478	1	1	0	0	0	0	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	c0020	2478	1	0	0	1	0	0	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	c0021	2478	1	0	1	0	0	0	copy fasta	PRDM1	chr6	106081336	106114938
PRDM2_chr1_13695188_13830079	0/0	c0001	5157	93	27	25	26	7	8	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	c0002	5160	91	15	22	38	4	12	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	c0003	5160	33	17	1	15	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	1/0	c0004	5157	28	1	1	19	2	4	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	c0005	5160	20	0	6	13	0	1	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	c0006	5160	7	0	3	0	1	3	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	c0007	5160	5	5	0	0	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	c0008	5160	5	1	0	4	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	c0009	5163	3	0	0	0	0	3	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	c0010	5160	2	0	0	1	0	1	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	c0011	5163	2	0	0	2	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	c0012	5160	2	2	0	0	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	c0013	5160	2	0	2	0	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	c0014	5157	2	0	0	0	0	2	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	c0015	5157	2	0	0	0	0	2	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	c0016	5160	2	0	1	1	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	c0017	5157	2	0	1	0	1	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	c0018	5160	1	1	0	0	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	c0019	5157	1	1	0	0	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	c0020	5160	1	0	0	0	0	1	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	c0021	5160	1	0	0	0	1	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	c0022	5160	1	1	0	0	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	c0023	5163	1	0	0	1	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	c0024	5163	1	0	0	1	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	c0025	5163	1	0	0	0	0	1	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	c0026	5160	1	0	0	1	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	c0027	5160	1	0	0	1	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	c0028	5160	1	0	0	1	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	c0029	5160	1	0	0	0	0	1	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	c0030	5157	1	0	0	1	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	c0031	5160	1	1	0	0	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	c0032	5160	1	1	0	0	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/1	c0033	5160	1	0	0	0	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	c0034	5157	1	0	1	0	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	c0035	5157	1	0	1	0	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	c0036	5157	1	0	0	0	0	1	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	c0037	5157	1	1	0	0	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	c0038	5160	1	1	0	0	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	c0039	5157	1	0	0	1	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	c0040	5160	1	1	0	0	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM4_chr12_107727871_107766137	1/1	c0001	2406	357	64	61	175	14	41	copy fasta	PRDM4	chr12	107727871	107766137
PRDM4_chr12_107727871_107766137	0/0	c0002	2406	17	16	1	0	0	0	copy fasta	PRDM4	chr12	107727871	107766137