JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRDM7_chr16_90051566_90082331	0/0	c0010	1429	2	2	0	0	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	c0011	1479	2	0	0	0	0	2	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	c0012	1479	1	0	0	1	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	c0013	1479	1	0	0	1	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	c0014	1479	1	0	1	0	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	c0015	1479	1	0	0	1	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	c0016	1479	1	0	0	0	1	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	c0017	1479	1	0	0	1	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	c0018	1479	1	0	0	1	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	c0019	1479	1	1	0	0	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	c0020	1479	1	1	0	0	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	c0021	1479	1	0	1	0	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	c0022	1479	1	0	0	0	0	1	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	c0023	1479	1	1	0	0	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	c0024	1479	1	1	0	0	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	c0025	1479	1	1	0	0	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	c0026	1479	1	0	0	1	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM8_chr4_80192503_80209329	1/0	c0001	2070	181	29	41	75	8	27	copy fasta	PRDM8	chr4	80192503	80209329
PRDM8_chr4_80192503_80209329	0/1	c0002	2070	155	5	19	108	5	17	copy fasta	PRDM8	chr4	80192503	80209329
PRDM8_chr4_80192503_80209329	0/0	c0003	2070	31	13	2	16	0	0	copy fasta	PRDM8	chr4	80192503	80209329
PRDM8_chr4_80192503_80209329	0/0	c0004	2070	25	22	3	0	0	0	copy fasta	PRDM8	chr4	80192503	80209329
PRDM8_chr4_80192503_80209329	0/0	c0005	2070	10	10	0	0	0	0	copy fasta	PRDM8	chr4	80192503	80209329
PRDM8_chr4_80192503_80209329	0/0	c0006	2070	5	2	2	0	1	0	copy fasta	PRDM8	chr4	80192503	80209329
PRDM8_chr4_80192503_80209329	0/0	c0007	2070	3	3	0	0	0	0	copy fasta	PRDM8	chr4	80192503	80209329
PRDM8_chr4_80192503_80209329	0/0	c0008	2070	2	2	0	0	0	0	copy fasta	PRDM8	chr4	80192503	80209329
PRDM8_chr4_80192503_80209329	0/0	c0009	2070	2	2	0	0	0	0	copy fasta	PRDM8	chr4	80192503	80209329
PRDM8_chr4_80192503_80209329	0/0	c0010	2070	2	2	0	0	0	0	copy fasta	PRDM8	chr4	80192503	80209329
PRDM8_chr4_80192503_80209329	0/0	c0011	2070	1	1	0	0	0	0	copy fasta	PRDM8	chr4	80192503	80209329
PRDM8_chr4_80192503_80209329	0/0	c0012	2070	1	0	1	0	0	0	copy fasta	PRDM8	chr4	80192503	80209329
PRDM8_chr4_80192503_80209329	0/0	c0013	2070	1	0	0	1	0	0	copy fasta	PRDM8	chr4	80192503	80209329
PRDM8_chr4_80192503_80209329	0/0	c0014	2070	1	1	0	0	0	0	copy fasta	PRDM8	chr4	80192503	80209329
PRDM9_chr5_23502609_23533093	0/1	c0001	2685	267	43	48	135	9	31	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	1/0	c0002	2685	45	5	3	35	1	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0003	2769	19	6	5	6	1	1	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0004	2769	4	0	3	0	0	1	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0005	2853	4	4	0	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0006	2685	4	4	0	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0007	2433	4	0	0	4	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0008	2769	4	3	1	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0009	2601	3	1	0	2	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0010	2685	3	2	1	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0011	3105	3	3	0	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0012	2685	3	0	2	0	1	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0013	2685	3	0	0	0	3	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0014	2685	2	0	2	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0015	2685	2	0	2	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0016	2769	2	0	2	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0017	2769	2	1	0	1	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0018	2685	2	0	2	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0019	3021	2	2	0	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093