JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRDM9_chr5_23502609_23533093	0/0	c0020	2685	2	2	0	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0021	2685	2	2	0	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0022	2853	2	1	1	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0023	2853	2	2	0	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0024	2685	2	0	0	2	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0025	2685	1	0	0	1	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0026	3021	1	1	0	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0027	2685	1	0	0	1	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0028	2685	1	0	0	0	0	1	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0029	2685	1	0	0	1	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0030	2685	1	0	0	1	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0031	2853	1	1	0	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0032	2517	1	0	0	1	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0033	2685	1	1	0	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0034	2685	1	0	0	1	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0035	2685	1	0	0	1	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0036	2685	1	0	1	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0037	2685	1	0	0	0	0	1	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0038	2685	1	0	0	1	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0039	2685	1	0	0	0	0	1	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0040	2685	1	0	1	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0041	2433	1	1	0	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0042	2685	1	1	0	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0043	2601	1	1	0	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0044	2685	1	0	1	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0045	2685	1	0	0	0	1	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0046	2685	1	0	0	1	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0047	2517	1	1	0	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0048	2601	1	0	1	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0049	2937	1	1	0	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0050	2685	1	0	0	1	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0051	2685	1	0	0	0	0	1	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0052	2685	1	0	0	0	0	1	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0053	2265	1	1	0	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0054	2685	1	0	0	1	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0055	2685	1	0	0	1	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0056	2685	1	0	0	1	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0057	2853	1	1	0	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0058	2848	1	1	0	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0059	2853	1	1	0	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	c0060	2685	1	1	0	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDX1_chr1_45506051_45526884	1/1	c0001	600	363	86	80	138	18	39	copy fasta	PRDX1	chr1	45506051	45526884
PRDX1_chr1_45506051_45526884	0/0	c0002	600	1	0	0	0	0	1	copy fasta	PRDX1	chr1	45506051	45526884
PRDX2_chr19_12791823_12806800	1/1	c0001	597	412	90	72	184	18	46	copy fasta	PRDX2	chr19	12791823	12806800
PRDX3_chr10_119162720_119183812	0/1	c0001	771	382	89	73	169	16	34	copy fasta	PRDX3	chr10	119162720	119183812
PRDX3_chr10_119162720_119183812	1/0	c0002	771	28	5	4	15	0	3	copy fasta	PRDX3	chr10	119162720	119183812
PRDX3_chr10_119162720_119183812	0/0	c0003	771	6	0	0	6	0	0	copy fasta	PRDX3	chr10	119162720	119183812
PRDX3_chr10_119162720_119183812	0/0	c0004	771	3	0	0	0	0	3	copy fasta	PRDX3	chr10	119162720	119183812
PRDX3_chr10_119162720_119183812	0/0	c0005	771	3	3	0	0	0	0	copy fasta	PRDX3	chr10	119162720	119183812
PRDX3_chr10_119162720_119183812	0/0	c0006	771	1	1	0	0	0	0	copy fasta	PRDX3	chr10	119162720	119183812