JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRDX3_chr10_119162720_119183812	0/0	c0007	771	1	0	1	0	0	0	copy fasta	PRDX3	chr10	119162720	119183812
PRDX3_chr10_119162720_119183812	0/0	c0008	771	1	1	0	0	0	0	copy fasta	PRDX3	chr10	119162720	119183812
PRDX3_chr10_119162720_119183812	0/0	c0009	771	1	1	0	0	0	0	copy fasta	PRDX3	chr10	119162720	119183812
PRDX4_chrX_23662493_23691397	1/1	c0001	816	342	74	62	167	13	24	copy fasta	PRDX4	chrX	23662493	23691397
PRDX4_chrX_23662493_23691397	0/0	c0002	816	2	2	0	0	0	0	copy fasta	PRDX4	chrX	23662493	23691397
PRDX4_chrX_23662493_23691397	0/0	c0003	819	1	0	0	1	0	0	copy fasta	PRDX4	chrX	23662493	23691397
PRDX4_chrX_23662493_23691397	0/0	c0004	814	1	0	0	1	0	0	copy fasta	PRDX4	chrX	23662493	23691397
PRDX4_chrX_23662493_23691397	0/0	c0005	815	1	0	0	1	0	0	copy fasta	PRDX4	chrX	23662493	23691397
PRDX4_chrX_23662493_23691397	0/0	c0006	815	1	0	0	1	0	0	copy fasta	PRDX4	chrX	23662493	23691397
PRDX4_chrX_23662493_23691397	0/0	c0007	816	1	0	0	0	0	1	copy fasta	PRDX4	chrX	23662493	23691397
PRDX5_chr11_64313121_64326811	0/1	c0001	645	350	61	68	162	14	44	copy fasta	PRDX5	chr11	64313121	64326811
PRDX5_chr11_64313121_64326811	1/0	c0002	645	30	27	2	0	0	0	copy fasta	PRDX5	chr11	64313121	64326811
PRDX5_chr11_64313121_64326811	0/0	c0003	645	2	0	0	0	0	2	copy fasta	PRDX5	chr11	64313121	64326811
PRDX5_chr11_64313121_64326811	0/0	c0004	645	1	0	1	0	0	0	copy fasta	PRDX5	chr11	64313121	64326811
PRDX5_chr11_64313121_64326811	0/0	c0005	645	1	0	0	1	0	0	copy fasta	PRDX5	chr11	64313121	64326811
PRDX5_chr11_64313121_64326811	0/0	c0006	645	1	0	0	1	0	0	copy fasta	PRDX5	chr11	64313121	64326811
PRDX5_chr11_64313121_64326811	0/0	c0007	645	1	0	1	0	0	0	copy fasta	PRDX5	chr11	64313121	64326811
PRDX6_chr1_173472335_173493815	1/1	c0001	675	398	93	68	180	16	39	copy fasta	PRDX6	chr1	173472335	173493815
PRDX6_chr1_173472335_173493815	0/0	c0002	675	2	0	0	2	0	0	copy fasta	PRDX6	chr1	173472335	173493815
PRDX6_chr1_173472335_173493815	0/0	c0003	675	1	0	0	0	0	1	copy fasta	PRDX6	chr1	173472335	173493815
PRDX6_chr1_173472335_173493815	0/0	c0004	675	1	1	0	0	0	0	copy fasta	PRDX6	chr1	173472335	173493815
PREB_chr2_27125756_27139636	1/1	c0001	1254	284	52	50	135	14	31	copy fasta	PREB	chr2	27125756	27139636
PREB_chr2_27125756_27139636	0/0	c0002	1254	93	31	17	38	2	5	copy fasta	PREB	chr2	27125756	27139636
PREB_chr2_27125756_27139636	0/0	c0003	1254	3	3	0	0	0	0	copy fasta	PREB	chr2	27125756	27139636
PREB_chr2_27125756_27139636	0/0	c0004	1254	3	2	1	0	0	0	copy fasta	PREB	chr2	27125756	27139636
PREB_chr2_27125756_27139636	0/0	c0005	1254	2	1	1	0	0	0	copy fasta	PREB	chr2	27125756	27139636
PREB_chr2_27125756_27139636	0/0	c0006	1254	2	2	0	0	0	0	copy fasta	PREB	chr2	27125756	27139636
PREB_chr2_27125756_27139636	0/0	c0007	1254	1	1	0	0	0	0	copy fasta	PREB	chr2	27125756	27139636
PREB_chr2_27125756_27139636	0/0	c0008	1254	1	0	0	1	0	0	copy fasta	PREB	chr2	27125756	27139636
PREB_chr2_27125756_27139636	0/0	c0009	1254	1	0	1	0	0	0	copy fasta	PREB	chr2	27125756	27139636
PREB_chr2_27125756_27139636	0/0	c0010	1254	1	0	0	1	0	0	copy fasta	PREB	chr2	27125756	27139636
PREB_chr2_27125756_27139636	0/0	c0011	1254	1	0	0	1	0	0	copy fasta	PREB	chr2	27125756	27139636
PRELID1_chr5_177298799_177311949	0/1	c0001	660	292	94	52	96	14	35	copy fasta	PRELID1	chr5	177298799	177311949
PRELID1_chr5_177298799_177311949	1/0	c0002	660	113	5	13	83	2	9	copy fasta	PRELID1	chr5	177298799	177311949
PRELID1_chr5_177298799_177311949	0/0	c0003	660	3	1	2	0	0	0	copy fasta	PRELID1	chr5	177298799	177311949
PRELID1_chr5_177298799_177311949	0/0	c0004	660	1	0	1	0	0	0	copy fasta	PRELID1	chr5	177298799	177311949
PRELID1_chr5_177298799_177311949	0/0	c0005	660	1	0	0	1	0	0	copy fasta	PRELID1	chr5	177298799	177311949
PRELID2_chr5_145751344_145840342	1/1	c0001	534	249	81	45	91	6	24	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	c0002	534	6	5	1	0	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	c0003	534	2	2	0	0	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	c0004	534	1	0	0	1	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID3A_chr18_12402929_12437234	1/1	c0001	519	385	92	80	155	12	44	copy fasta	PRELID3A	chr18	12402929	12437234
PRELID3A_chr18_12402929_12437234	0/0	c0002	519	4	2	2	0	0	0	copy fasta	PRELID3A	chr18	12402929	12437234
PRELID3A_chr18_12402929_12437234	0/0	c0003	519	2	0	0	2	0	0	copy fasta	PRELID3A	chr18	12402929	12437234
PRELID3A_chr18_12402929_12437234	0/0	c0004	519	1	1	0	0	0	0	copy fasta	PRELID3A	chr18	12402929	12437234
PRELID3A_chr18_12402929_12437234	0/0	c0005	519	1	0	0	1	0	0	copy fasta	PRELID3A	chr18	12402929	12437234
PRELID3A_chr18_12402929_12437234	0/0	c0006	519	1	1	0	0	0	0	copy fasta	PRELID3A	chr18	12402929	12437234
PRELID3B_chr20_59028145_59047786	1/1	c0001	585	410	91	77	178	14	48	copy fasta	PRELID3B	chr20	59028145	59047786
PRELID3B_chr20_59028145_59047786	0/0	c0002	585	1	1	0	0	0	0	copy fasta	PRELID3B	chr20	59028145	59047786
PRELID3B_chr20_59028145_59047786	0/0	c0003	585	1	0	1	0	0	0	copy fasta	PRELID3B	chr20	59028145	59047786