JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRELP_chr1_203470806_203496352	1/1	c0001	1149	396	73	74	193	14	40	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	c0002	1149	6	6	0	0	0	0	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	c0003	1149	6	6	0	0	0	0	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	c0004	1149	5	0	0	5	0	0	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	c0005	1149	4	3	1	0	0	0	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	c0006	1149	2	0	0	0	0	2	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	c0007	1149	2	0	0	0	0	2	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	c0008	1149	1	0	0	0	0	1	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	c0009	1149	1	1	0	0	0	0	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	c0010	1149	1	0	0	0	0	1	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	c0011	1149	1	1	0	0	0	0	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	c0012	1149	1	0	1	0	0	0	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	c0013	1149	1	0	0	0	0	1	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	c0014	1149	1	0	0	1	0	0	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	c0015	1149	1	0	0	0	0	1	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	c0016	1149	1	0	0	1	0	0	copy fasta	PRELP	chr1	203470806	203496352
PREPL_chr2_44312607_44366494	1/1	c0001	1917	352	72	64	166	10	38	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	c0002	1917	14	12	2	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	c0003	1917	4	4	0	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	c0004	1917	2	1	1	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	c0005	1917	1	1	0	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	c0006	1917	1	0	0	0	0	1	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	c0007	1917	1	0	0	0	0	1	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	c0008	1917	1	0	1	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	c0009	1917	1	1	0	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	c0010	1917	1	1	0	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	c0011	1917	1	1	0	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	c0012	1917	1	1	0	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	c0013	1917	1	1	0	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	c0014	1917	1	1	0	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREP_chr6_105268218_105408082	1/1	c0001	2133	48	2	7	28	4	5	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	c0002	2133	33	30	2	0	1	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	c0003	2133	31	4	4	17	0	6	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	c0004	2133	22	12	6	0	0	4	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	c0005	2133	15	11	3	0	1	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	c0006	2133	15	9	1	0	0	5	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	c0007	2133	11	9	0	2	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	c0008	2133	10	3	2	1	0	4	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	c0009	2133	9	6	1	1	0	1	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	c0010	2133	6	1	1	0	1	3	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	c0011	2133	4	0	1	0	1	2	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	c0012	2133	3	3	0	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	c0013	2133	1	1	0	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	c0014	2133	1	1	0	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	c0015	2133	1	0	0	1	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	c0016	2133	1	0	0	1	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	c0017	2133	1	0	0	1	0	0	copy fasta	PREP	chr6	105268218	105408082
PREX1_chr20_48619252_48832999	0/0	c0001	4980	82	16	15	38	4	9	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/1	c0002	4980	38	5	7	17	3	5	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	c0003	4980	32	16	7	7	0	2	copy fasta	PREX1	chr20	48619252	48832999